Home
Mutant Lines
54-4917-1

54-4917-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 26427079 [Map]; Strand: w
- AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
  Distance: 0; Region: exon5 (3UTR)
- AT5G66100.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
  Distance: -410; Region: promoter

CGGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATACA GTGTCAAGCA TTTCCTGTCT TATCATGGTT 
GTTGTTGTTG TGTCCTTTGT TTTCTCCGTT ACTCACATAC TAACGTGTTC 
GGCCACAAAT TAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAACCC 
CNNTTAAAAA AAAAAAANTT TTTTTTTTNN CCCCCNAAAA AAAAANNGGG 
GNNNNGGNAA AAAAAAAAAA AAANNCCGGG GGGGGGGNAA AAAANNNNNA 
ANAANAANTG GGGGGGNNNC CAAAAAAAAA AAANGGGGGG GNNNNCCCCC 
CAAAAAAANN ANGGGGGGGG GGGNTNNAAA AAANNNGGGG GNNAANNNCC 
CCNNNNGNGG NNNNGGGGGG GGNNNTNTNA NCCNNNNNGG GGGGGGGGGG 
NNTTTNNNNN NNCNNNGGGG GGGGGGGGNA AANNTTTNNN AAAAAAAANA 
AANCCNC

3 prime edge [+] show sequence

Chromosome: 5; Position: 26427077 [Map]; Strand: w
- AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
  Distance: 0; Region: exon5 (3UTR)
- AT5G66100.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
  Distance: -412; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTAATGAC 
ACATGCATCT CACACCTTGA CACATTTCCA TCCCCTCTCC TAGTAATGCT 
CTTCTACGGC AACCAAACAC AGAGAAAAAT AAAACAAGTG GTATGTCTAT 
CATATAAGCA TTTGGCGGGA GCGATCACAA GGGCAAGAGG AGGACNGGGG 
CAGGGGATGA ACTCAGCGAG TAGATTGGCG TCAATGTACT TAGAGTGGAT 
GGCTTCCATG CTCATCACCA CCAGCTCCAT CTTCAGCTCA TCTGCCACCT 
CTCCTATTAT GGCCGTCGCT TTTTTCCCTT CCCCAAGCCT CTCCAACAGC 
TTGAACTCCT CGAACCCACC TGCAACCACC ACATTATAGT TAACCTTTCT 
TCAATAAGGG ATTCCAACAC TATAGTTTAC CTACAATTTC CTACAAGTAA 
TTCCTCAATT TTACCTTCAG ACAAATGCCA CCGGATGTTG GATACTTGAG 
TCTCATGCTC CGAAGATGAT TCTCTCTTTT CTTCGTCAAT GACTGAATCA 
ACAACGGTGG TCACAGATGA TCAACACGGC TATATAATTC ATATGATACA 
TAAGGGGATA TTAATGCAAC ACTAATTGTT CTTACCTACA ACTGTGATAT 
CAGCTCCATA CTTCTTTGCC AAGCTGGTTG TTGTAGCAGC AGCCTATCAA 
ATTAAGTGTA ATCAGCTTTT TTGTTTGGTG TCAACATGTT CTCAAAAAGA 
TAACAAGCTA AACAATAACC TGTCTGGTGC

AT5G66090.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66100.1

Model type: Protein coding
Short Description: winged-helix DNA-binding transcription factor family protein
Computational Description: winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR