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54-4919-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 12074278 [Map]; Strand: c
      • AT5G32436.1 - [+] show detail - transposable element gene
        Distance: -335; Region: promoter
    Flanking Genome Sequence: 54-4919-1 - 5-prime edge 
    GTTTGGGGTA CGATGGACNN GTTTGAGGGC GACNANTNNA TCTGCTGCTT 
    CATCTGATGT TGCCTTGATC NAGTAGGANG GTCGAGTAAA CTGCTACCTC 
    CTTTGTCGCA TCCAGGATCG AGTAAAGAGG TATGAGTANG ATGATGCCTC 
    GTTCTGNTGC NAACTGGATC GAGTCAAGAG ATCCNANTAG GATGATACAT 
    AGGNTTGTGN GTAGTCAATA TGNCTAANTG CNTCNTANGT NATNGCAGNA 
    TNTAAGGTGT NAATCCAAAT GGGTGTAATT GCTGTCANTC ATNGATNTGA 
    TNANGAGAAT ACCTANNTCN NGCCAANACG TGAATAAGAN TGGTGTGNTT 
    CTACTAAACC TAAGCAACAG GTTAACATGC NANTCACTTN ACNAGANCTG 
    AANGNTAACT AAGCGCTANG TTAAGCACTC GATNGAACGN ACGAATAAAC 
    ANGTGGAGTA CNATACTAAT AACACCAATT TTGNTCNAAN CNAACAGAGT 
    ACTAAAAACA CNAGTTTTGG CTTNTCNACG ACACANAGCT CTTAACAATG 
    NGGTAATTGG TCTTAGTGGA CTNCTCANTC CTTNTGCCGA CTGNCATACT 
    CAATCAANCT ATCCCTTGAC ANTAGATTCC TTAACCAAAA NAAACCAANT 
    NCCCNGCGAG NGANTCTCTT TCNTTNCGAA CCTCCCTAGN CTCATTTTCC 
    ATTGNTGANT CTTAATANAG CNAGNTTTTN ACCCCCCNTC CCTTTNNNGT 
    NNATTANGGG GGNTTAANCC TCCAAANCCT TGGGCCNANA ANNAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3159627 [Map]; Strand: w
      • AT5G10100.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: intron8 (CDS)
      • AT5G10100.2 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 54-4919-1 - 3-prime edge 
    AATTTAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    CTCTAACAAC AACTCAAGTG TTTACAAAAA TAAAAATAAA AAATAACAAC 
    AACTCGA

AT5G10100.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: embryo, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G65140.1); Has 2366 Blast hits to 2362 proteins in 838 species: Archae - 41; Bacteria - 1352; Metazoa - 219; Fungi - 152; Plants - 467; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10100.2

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: embryo, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G65140.1).
Link
InterPro Scan - TAIR

AT5G32436.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 8.5e-34 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)
Link
InterPro Scan - TAIR