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54-4946-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 167797 [Map]; Strand: c
      • AT4G00380.1 - [+] show detail - XH/XS domain-containing protein
        Distance: -162; Region: promoter
    Flanking Genome Sequence: 54-4946-1 - 5-prime edge 
    CCCACGAGCA AGAGAAACCC TAGGCAACAA CTTAACAAAC AAAACAAAAT 
    TGACACTGGA TAAAGCAAAA GAGACGAAAG TGATACAGCA TTTACAAAAT 
    TGAGCTAAGA GAGTGACGCA TGCATGATAA GGAACCTAGC GAAATCAAAA 
    ATATATTTTT AAGTAACAAG TGAGTAAAGG CGTTAAATCA CGAAATGCAT 
    AGGGGAATCG AAAAAATTCA TTAAACGAGA GATTTCACTG TGAAAACAGA 
    GAATAGAAGA AATCTGGAGC TTACGCTAGA GAGGGAAGGA AAAGGAACAA 
    CACGGCGATG ACTCAACGCT TGATGAAGAG TGGAGTAGAG AGAGAGAGTG 
    AGTGAGGAAG ATGAAGAGTT NTGNTATTTT GGAAAATATA TCANAAAAAT 
    TAGNGGGTGA TTTGCAAAAA TAACACANNG TTATACNNGA ATTAAGAATN 
    TTGCACTATN AATTANCANG AGNAATGGNG ANATAGATAA AAGAGANNTT 
    TTCACAAATT GCATAANAAN AAGTTTTTNN GACAAANCCT NTTTTTNTAC 
    TNTAGGNNGA NNNACCCNNT TTNNAANNNN NNTNNGGNGG GNANANAANN 
    TTTTTTTTTT TTTTTTNTGN NNGGGGNNCA AAANNNGGGG GGGGGGGNGN 
    NNNTTTNNNN ANANCGGGGG GGGGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 167913 [Map]; Strand: c
      • AT4G00380.1 - [+] show detail - XH/XS domain-containing protein
        Distance: -46; Region: promoter
    Flanking Genome Sequence: 54-4946-1 - 3-prime edge 
    CTCGTGGGAT TGCCTAGAAA TTGAGTCTCT TTTGGGCCTT ATTTTGTTCT 
    TCTTCTCTGT TTTTGTAACA TTCTTTTTCT CCAGGTAAAG CAGGTACGAT 
    GGACATTTCT GATGAAGAGT CTGAGATCAG CGAGTCAGAG ATTGAGGAGT 
    ATTCTAAAAC ACCCTACCAC CTTTTACGCA GTGAGACTTA CTACAAGGTG 
    AAGGTGAATG GACGGCTCAG ATGCCCCTTT TGTGTAGGCA AGAAGAAGCA 
    AGATTACAAG TACAAGGAGT TGCATGCACA TGCTACTGGT GTTTCCAAAG 
    GTTCTGCCAC CAGAAGTGCT TTACAGAAGT CTAATCATCT TGCTTTAGCT 
    AAGTTTTTAG AGAATGATCT TGCTGGTTAT GCAGAACCTC TTCCACGCCC 
    TCCGGTTGTT CCTCCTCTGT TAGACGAGAC TGAACCAAAT CCTCATAACG 
    TCTATGTCTG GCCATGGATG GGGATTGTTG TTAACCCTTT GAAANAAACG 
    GATGACAAGG AGCTTCTACT TGATTCANTA TATTGGCTGC NNACCCTTTC 
    CAAATTCAAG CCTGNNGAAN TGAATGCCTT TTGGGTCNAA CAANATTCNA 
    TTGNNGGGGT TATNGCTAAN TTTNACNNNN ACTGGANNGG GNNNGCTGNT 
    GNCNNNNNCT TNAANNGAAT TNTNGANCCA AGGNNCNNCN AAANNANNGN 
    NGG

AT4G00380.1

Model type
Protein coding
Short Description
XH/XS domain-containing protein
Computational Description
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 52398 Blast hits to 32322 proteins in 2074 species: Archae - 615; Bacteria - 6626; Metazoa - 25839; Fungi - 3724; Plants - 1961; Viruses - 202; Other Eukaryotes - 13431 (source: NCBI BLink).
Link
InterPro Scan - TAIR