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54-4978-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21602025 [Map]; Strand: w
      • AT3G58390.1 - [+] show detail - Eukaryotic release factor 1 (eRF1) family protein
        Distance: -808; Region: promoter
    Flanking Genome Sequence: 54-4978-1 - 5-prime edge 
    TGCTCACATG TTGTTCTTAC TGTTTTGCTC ACTTCTTGTT GTTCTTAGGA 
    TATCTTTCGA AATCATTGGA AGATATGACA CAATTTGAAT GGATATTAAT 
    CATCATCATT TCCTAAATCT TTTTCGGTAG TTTGTATGAG ATTAGAAGCT 
    GCTACTAATT ATCTTGATAA GGTTAATATA AAAATAGACA TAAAAAGAGA 
    AAAATGGAGG AGAAACATAA TGGTTTAGCA CAATCGAAAA TAGAGTACTA 
    CTCTGTTTCT CACTTGATCC TTCACTTTCA CTCCATCTCC TTTTCTCAAA 
    TCCTTCCTCA TGTTTTTGCA GCACCACTAT TCAAGCCTTA AATCTCATGA 
    CGGTAGAGAA AAATGGAAGT TATGATCGAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21598974 [Map]; Strand: c
      • AT3G58380.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-4978-1 - 3-prime edge 
    ANTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTGATAGA 
    AGAACTCATA GTTAGATCCC TTTGGTAAGG CTAGAAGACG CCTACAAAAA 
    AAATCAAATC ACCAGAACAT AATTAGATGA AAAGTACGTT TGGAACAAAA 
    GTTGGTTCAG TTTTTACCAT CTACTGCCAG CAATCAGAAA GGGATCAGAA 
    TGACTCTGCT TAGGATAAAA AACGTTGAGA TCCTTTATCA CCCAGACAAA 
    TTTCTTGTCA ACTTCCTTCT CCATTATATT ACTCGCAATG AAACTACAAC 
    TTGCATGAAG AGAATTAANC CAAATTCATG TNCCTNCCAA TCANAGTATC 
    AAACACACAC ACTCTCTAAC AAATTCTTTC TTANTTTAAC AAAGATTTTA 
    CTATGAACTC AAAGACATAT GAAGTTTCAN CCAGCAGGNN AANCTACTTA 
    NCNCTTTTTG ACCGTAGGGT GAGGAAANGA AATATTCTNG GGACATGCAA 
    GATTNNGGGA ATAAAGCGAT TACCCTTGAG AGGCNAGTTG AGGNGAGANN 
    CAGCGACTCA AAANTCAGAA CTCCTTCCCA CTTTGGGGGA GTTAGTCCAN 
    NNTTGTCANG AGNTTCNATC NTTTTCCAAA NNCCCCNTNN GGGGGGAGGG 
    AATNGNCCCC ANACNAGGNG NGGGNNTNNN TATAACTTTT NNTCCCCCCC 
    CCCCCCCNCC NGGNTNTTTT TNTTTTTNNG TNGGGGGGGG GANNTAAANT 
    CCNTTTTTTG TTTTTNCCNN NNCNGGGGNN GAANAAAAAA AANAGNG

AT3G58380.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G58360.1); Has 402 Blast hits to 357 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 402; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G58390.1

Model type
Protein coding
Short Description
Eukaryotic release factor 1 (eRF1) family protein
Computational Description
Eukaryotic release factor 1 (eRF1) family protein; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination, translation; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: Eukaryotic release factor 1 (eRF1) family protein (TAIR:AT4G27650.1); Has 768 Blast hits to 765 proteins in 318 species: Archae - 259; Bacteria - 0; Metazoa - 140; Fungi - 157; Plants - 51; Viruses - 1; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR