1. Home
  2. Mutant Lines
  3. 54-4992-1

54-4992-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7241638 [Map]; Strand: c
      • AT1G20823.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 1969; Region: intergenic
      • AT1G20820.1 - [+] show detail - pre-tRNA
        Distance: 1123; Region: intergenic
    Flanking Genome Sequence: 54-4992-1 - 5-prime edge 
    CCTCCAGCAA CCTCACACGA GCCTCTCACG TACGTATTCA GCGCCCTTAA 
    AGTAAACCCA ATTACTCTTG CAAAATGTTT TTCAACATGC GGGTATTAGA 
    CCATCTCCAT CAGTAAAAAT AAGAAAAGTT TCTAAAAAAA AAAAAAAAAA 
    AAAANNTTTT NAAAAAAAAA NAANNNTTNT TTTTTTTTTA AAGGGGGNNN 
    AAAANNTTNN NAAANNCNGG GNCNAANGGG GGNNAAAAAN NNNNNCAAAN 
    TGGGGGNNAA AAAAAAANTN AAATTTTTTT TNNCNNAAAA AAAAAAAANN 
    TNTTTNAANN CNTTTTTTTN AAAAANNNNN ANNTTNGGGG GGGNNAAAAA 
    AGAAAANNTG GGGGGGGGGG GNNGNCGNGA AACCTGGGGG GGGNNNGGGN 
    CCCNNTNNNG GGGNNAAAAA AAANNNGTTT TTAAAAAAAA AAAAAANNGG 
    GNTTTTNTTT NAAAAAAANC TGGGGNCCCT TGTAAAGAAA AACNGGACAC 
    GNNNNGGNGG TTTAANAAAT TANNNGAAAA ANNNNNNGGG AAAAAAGANG 
    NNNAAAAATN NCCCNTAGTN TCTNGCGTGG GGGNTATTAA CTTTNTTTTT 
    TNGGGGGGNN GAAAANTATN NGTTTTNTTT TAAAAAAAAA AGGTTTGTGG 
    NGGAGANAAN TNGNNGNNTT TTTTTTTNTT NANCNCCGGN GAATNANTGG 
    GGGGGGAAAN ANAANAAANG GGNAGNGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7241754 [Map]; Strand: c
      • AT1G20823.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 2085; Region: intergenic
      • AT1G20820.1 - [+] show detail - pre-tRNA
        Distance: 1007; Region: intergenic
    Flanking Genome Sequence: 54-4992-1 - 3-prime edge 
    GCTGGAGGCC GTAAGAATAA AGTGTAAAAG AGTACTTTTT CGTTTACTTG 
    GTTATAAAGT TCGGTTTATG TATAAAACTA TAAAACTAGA GCTTCACGAT 
    CATTACAAAT GTTTTATCAT TTAGGATATT AAAAATGTTA ATCTGTTACG 
    ATCATCAAAA AATACTGAAA TTTTGAAAAC TAGCTAGCTT GTAAGAAATC 
    TTTCTTCAAG AAAAAGAAGT AGAAACCAGA AAGTGAAGAG AGTGCTTTAT 
    GTTTTGTCCA AGGACTATAA ATTCGCAGAC TAAAATGATG AGAGTTGTAA 
    AGTTTGCCAA TGAGGCTGGA GATTCCCATA TTTATTATGT TCAGCACTAT 
    TTTGTGCATT ACTGATTGTT TCTGTTTATT ACGTAAATGA TTAATACCAC 
    TTTTTAAAAA TGGGTGTTGC AAAATAAACC TTTGCAAAAT AAATATTACA 
    CTGTACCATT GTATACATTG TTAATTCTTT CAAACAAAGT ATTAGTGTTT 
    ACACGTCAAA CACACTTTGA AAACTACAAC ATTCATTTTG TTTTGTTAAG 
    TATTTTCTGC ATGCAAACGC NNTTTCCNAA CAAGATTTTT TTGGCCTGTC 
    TACGTNTACT ATTNCTAAAA ACATNTTATG AAANACCCNA NAAAGGGTTT 
    TAATNTTTTT NTGTGAGCGC NTNTGCCTNN NTTNNNCCNN NNNTNNNNNN 
    CNCCCNNNNN CNNNTGGNNN TTTTTTTTTT T

AT1G20820.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Trp (anticodon: CCA)
Link
InterPro Scan - TAIR

AT1G20823.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink).
Link
InterPro Scan - TAIR