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54-5003-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24130617 [Map]; Strand: c
      • AT1G64960.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5003-1 - 5-prime edge 
    AGTTTTAGAT ACTCGANNNA GCCCGGGNGC GAANNAAACN CGTGTCTGAN 
    AATCTTCAGT CTTCACATAC AACGGCGAAA CAACACACCG CATAAGCAAC 
    ATCCTAAGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4495979 [Map]; Strand: w
      • AT3G13720.1 - [+] show detail - PRA1 (Prenylated rab acceptor) family protein
        Distance: -23; Region: promoter
    Flanking Genome Sequence: 54-5003-1 - 3-prime edge 
    CTAAAACTTA TACTTTTCAG ACATTGACCA AGTAGTGAAT CAAATCCTCA 
    CGTTACACTA TATTGTAATC TTTTTAAAAC ACGATCTAAT TAAATTTTGT 
    TTTATTTCAT AAACATAGAT TAGTTTAGAA AACGCCATAT GCAAATGTGT 
    ATCACCTAAT TCTTGGGACC TTTCAGAATT CATATATACA CATAACAAAC 
    AGTCTTTTCA TTTACTTTCT CTATTCAATC TCACACGCGC TAAACCATAA 
    CCCGATATTA CTAATGACGA ACTACGGTGC GATTCCGACG TCGTCTCATG 
    CATCTCCGTT GGTGGATGTC GAGTCTCTCT CACGCGCTAA ACACCGTATC 
    AAAGCCGGGC TAGCCACGCG CCGTGCTTGG AGAGTGATGT TCGATTTCCA 
    CTCCATGGGA CTGCCTCACG GTGTCTCCGA TGCGTTCACA AGAATCAAGA 
    CCAATCTTGC TTACTTCCGT ATGAACTACG CAATCGTTGT CTTGATCGTT 
    ATCTTCTTCA GCTTGATCTG GCATNCGACA TCGCTCATCG TCTTCACCGT 
    CTTGGTCGTT GNTTGGATCT TTCTGTATTT TCTCCGNGAT GAGCCTATCA 
    AGCTGTTCCG GNTTCANATC GATGATCGGA CGGNCTTGAT TGTTTTNTCG 
    GNGTTAACCG NCGNNNTACT NCTGGGGACC ANGCNANNNN NANNNTTGNN 
    GGNGNGCTTN NGACNGGACT NNNNNG

AT1G64960.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G13720.1

Model type
Protein coding
Short Description
PRA1 (Prenylated rab acceptor) family protein
Computational Description
PRA8; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.F4 (TAIR:AT3G13710.1); Has 408 Blast hits to 408 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 28; Plants - 309; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR