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54-5077-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21602381 [Map]; Strand: c
      • AT3G58390.1 - [+] show detail - Eukaryotic release factor 1 (eRF1) family protein
        Distance: -1164; Region: intergenic
      • AT3G58400.1 - [+] show detail - TRAF-like family protein
        Distance: 286; Region: intergenic
    Flanking Genome Sequence: 54-5077-1 - 5-prime edge 
    CTTGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ATATCCAAAA ACATGGCTCT TTTGTTGAGT 
    AAGTGGGAAA TCACTAAGCT

AT3G58390.1

Model type
Protein coding
Short Description
Eukaryotic release factor 1 (eRF1) family protein
Computational Description
Eukaryotic release factor 1 (eRF1) family protein; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination, translation; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: Eukaryotic release factor 1 (eRF1) family protein (TAIR:AT4G27650.1); Has 768 Blast hits to 765 proteins in 318 species: Archae - 259; Bacteria - 0; Metazoa - 140; Fungi - 157; Plants - 51; Viruses - 1; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G58400.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: RESTRICTED TEV MOVEMENT 3 (TAIR:AT3G58350.1); Has 513 Blast hits to 461 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 505; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR