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54-5100-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26442538 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: 54-5100-1 - 5-prime edge 
    CTCCAGAGTT CTTGCCCACC AGAAATTCAA GTTGCCTTGC AGCCTGTTTT 
    GGAAAAAAAA CAGACAAATG CAAGGCCATG TAAATTCATT TTGAATTTCA 
    CTAAGAAAAT GGGAAATCGG ACTCCGTAAG ATGCAGTTTG ATACCATGTA 
    GTATCCGCTA AGAGCCCGAA CATATCGTTT AAGAGCAGGA CGGCTGGTGA 
    AGTAGCCAGT CCAGTAAGCG TATGCCCGAT CCGCATATCT GCAGAGAGTA 
    GGGGGAAATT ATTGACTATT GAGAAAATCA AGTAGTTGAA CAAAAGGAAT 
    ATGTAAATTT ATTTGGTGAC AGTACTAAAG GCACTCACGG GAAAAAGTCA 
    TGAGTCTTGA GAGGCCAAGT AACATTGGCA ACATTCTTGG CATCAACATA 
    GAGAGATGGT GTGGAGTACA AGGCGTTCAC ACGGCCATCC TGTTGAATGG 
    AATTATTGGT GATGAGAATC TAGTCTCCAA AGACAGCGAG ATTGATATTG 
    AGCAATCACA GCAAGCAAGA GATATGAAAA CCTTGTTAAC ATAATGGATA 
    AGTCTGTCCA TCTGTCTGAA CCAAGACTCG GCGAACTGGT ACTGAAAATC 
    ATCGCCCATT GTCCACATCA CATGGTTCCC TCGACTCACA TTAGCCTATG 
    TCCACATTGA CTACTTTCAG AATTAATCCA AGATTACACA CACA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26442474 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 54-5100-1 - 3-prime edge 
    ATGAAAACGG NAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTCTGGAG GTCCAAACAC TTACAGTCTT GGGGATGCTT TAGGGATAGC 
    AGCAGCACCA TGATGCTGTC ACTGGAACTG CCAAGCAGCA TGTAACAAAT 
    GATTACATGA AACGCCTTGC TCTTGGTGCT TCTGAGGTAA GATACTATAT 
    ATGAAAACTT TTTTCTTTTT TGTCTTTTTT CTTATATCAG TAATCATCTA 
    ATTATTCCGT AGGCAGAAGC TGTGGTGAAT T

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR