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54-5101-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 512140 [Map]; Strand: c
      • AT5G02390.2 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -430; Region: promoter
      • AT5G02390.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -430; Region: promoter
    Flanking Genome Sequence: 54-5101-1 - 5-prime edge 
    CNNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA ATGGGGTGTT TTAGATTTAC GAGTTTTGTG 
    TAAATTTGCC AAAACCACGA TTACCGTTTT GGATTTGGGA TCACCATTGA 
    TGACCTTGTA CGTTATAGAA TGCGTATAAC TACNGTTTTA TGTTATGATT 
    AGTAACNTTA TTTGTTTTGC TTCGAAATAT ATTTATCGGA TCAAACTTGT 
    CTTCGGATTT GAAATTTAGA TATATGTGAA CGGTTTCATG CTCTTCAACA 
    TTCACAATCT GGGTAATGTA TGCTATAAAA CATTGAACCA GAGGTCAATT 
    CTCTGACCAT TAAAATGCTC TGCTTCGGGA AATTCTTGTT CTGTTTTCCT 
    TATAATTTTT GCTGGACTTT GATGTGTTTT AAAGCT

AT5G02390.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07620.1); Has 4713 Blast hits to 3576 proteins in 331 species: Archae - 20; Bacteria - 252; Metazoa - 1533; Fungi - 380; Plants - 348; Viruses - 15; Other Eukaryotes - 2165 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02390.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
Protein of unknown function (DUF3741); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR