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54-5160-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433320 [Map]; Strand: w
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -222; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: intron1 (CDS)
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -744; Region: promoter
    Flanking Genome Sequence: 54-5160-1 - 5-prime edge 
    CGTTTGATGG TGGCGACAAT TAAAGCTCAA AAAGCTAAAC TAAATTAAAA 
    TGAAATGGTC TTATGGGACA AAAGATGAAA CCTTTGAAGA AGTTCTGAGT 
    GATCAAGCAA GCCGGCGCCG ATATAGATCG GATAACTCCG GTCACCAAGA 
    TCAACCTCGA CGACAGTGGG AGAAGAGATG GAGCGTTGAT CGTTAAGCGG 
    TTCGTTCATG AGCTGGCTAG CACCGGCGCG CACACGAGAC CTGGAAAGAG 
    TCGTGGAAGA TAAAGAAAGT TCCCCAGGTT TAGACTTTGC AGAAGCCACA 
    GGGAAAAAAA TAGTTGGTGG AGCAATAAAG GCACGGCTTT GAAAGGAGTT 
    GAGATTCTTG GAGGCGGCGA CGTTGGAAAG AGAAATGGTG TTGGCTGCCA 
    TGGAAATCGA TGCGGATCAG AAGTCGGGTT TGGGGAGAAG AGAGAGTTGA 
    AGAAAAGAAA TTGGGTTGGT GAAGAAGAAG AAGACTGAAT TGAAAAAATA 
    CATTAGAGGA TTGATTTCGT GGTGTTGTTT GGTGAAGCCT TCGGAGACGG 
    CGTGGGGTAG GTTGGTGGNC NCTCTTTCNG GCNNTNGGTG NGNTCTNCNN 
    TTNTNGNCTA NGCTTANACN GNTNATTNNT GNTCTCTNGG NNCNTTNGNN 
    GNTNTNNNTN NATCTCNACC NNTCANCTAT CAANNNANNN ANAAN

AT5G66120.1

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 8426 Blast hits to 8421 proteins in 2521 species: Archae - 162; Bacteria - 5225; Metazoa - 16; Fungi - 182; Plants - 46; Viruses - 2; Other Eukaryotes - 2793 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR