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54-5171-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17873656 [Map]; Strand: w
      • AT4G38052.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -803; Region: promoter
      • AT4G38060.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 54-5171-1 - 5-prime edge 
    CTCTTTTCTA TTCCCTTTTT CTCCTTTTTT TGGGGTTTTC AGGATAAATG 
    TAGTAACCAA AATGATTCTT CAGAGCGTAT TAAAACTACT TACTACTAAC 
    TAACTACACA AGGAAGAGAC CTGGTCAAAG TTTTTGCAGA GATGAAAGCC 
    ATTGCTCCAT GTAATTCTTC CCATCTGCAA ATTTGATAAG AATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17873584 [Map]; Strand: w
      • AT4G38052.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -731; Region: promoter
      • AT4G38060.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 54-5171-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    AGGGAACCAA AAAAAAANCN CAAGTAGTTT TNTGGTTTAN ATTAAAATGA 
    TGGGTAGTTG CTTNCTTTGA TCCTGGAANC GGNTCAAGTC CAANAAAAAG 
    GGAAAAAAAA NTANTAAAAA AANGTNGGGG GGTNGGNAAA NCTTTGNAAA 
    AAAAGNNCCC TTTAAAATTG NTNNCTTNCN AAAACCNNTT GNAATTCNTT 
    TACGGGNNGG NGGANNTNTT TTTNNTTTAA TCNTGGAANC CCCTTTTGNC 
    CCCCCTAAAA ANGNANTANA AACCCCCNNC CNANGTTTTT NTTCNCCCCC 
    CCCCAAAANG GGGGGGNGGG NGTGNNNNNC CCCCAAATNG TTTTNGGNTT 
    CNCNCCNNGG GGNNNTTTTT TNTGGGGGGG AANNNNCATC CCCAANNGTT 
    TTTTNANGAN CNTTCTTNNC CNGCNNCNNG GGGGTGTTNT TNTTTCCCCC 
    CCAAAANAAN NGGGNGGGNN GGGGGGGGTN TTNTTTTCAA NNCNNNNNCT 
    NCGCNNCNCN NTCCCNGTTC CNCCCCCGGG CGNGNCGNNT TCNCGCCCNN 
    CCCNCCTCTN CNAAGACAGG GANANNGTCC CCCCCCNNCT TTTTTTTTTG 
    NTNGNGGGGN NGTNGTNNNG CATNNANCCC NCCCCCGNGN GGNGGNGGCN 
    NNNNCNTCCC CGATCCCGGA GNNNNNNNAT NCCCANNANN GCAGNCCGCG 
    AACGGCCCNA NGGACAANNC NNGCNNCNCN NTTNCNNNGA TNNNNCTNCC 
    NCNGNNCNCN CCNTCNNNTN GNGNNNACGN ACCNCACNNG NTNNNT

AT4G38052.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38060.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR