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54-5195-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425426 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -20; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -310; Region: promoter
    Flanking Genome Sequence: 54-5195-1 - 5-prime edge 
    NAAACTAACA AAATCGGTTA TACGATAACG GTCGGTACGG GATTTTCCCA 
    TCCTACTTTC ATCCCCACAT ATAGAAGAAG AGTTATTTGA GAGAGAGAGA 
    GAGAGGCTCT GGAAATCTTG TGATCCATAA ATTGTCTCTC TTCTTTTCCT 
    CTGTTCTCAT ATACAAGGAA AAGGGCTTCC TCTGTTCTGT TCCTAATAAA 
    TATCTGAAAT CAAAAACAGA GAGAGTCTTT TCTTTTTTTC TTTCACTCTA 
    TCTCTCTCCA CACATGTTAC TTACAACTTA ATAGTTTCTC TATATCTCCT 
    TGAGATCTCC ATCCAGCTGT TGCTTTTTTT ACTAAACAAA ACTCCTCTTT 
    GTGTGAGTGA ATGAATGGAA GTTNCCGACT CTNTCTTNTT TNGCNNNNNC 
    AACATCCTNC ATGNCATNCA TTNANAAAGA ANCAAGNNGA ANNCAAGAGG 
    GCGANACNAA GACANNCGAA NNCNANANCA NNTCNANAGC ANNNAAGCCA 
    NNNANANNAC ANTANAGNNG NCGNGTNNNN GANNANGANN CANAGNNNGN 
    NCANAGNTNN NGAANNAGTG NNNCNCGNNG GNCNACNCNN AGGGCGCGTN 
    ANANAANGNN NNAGCACNGC NNNNNAGNNA GNGCAGNAAC NANCNATNCG 
    NNCNNCGCCN CGNNNNTNGT GANGGCCNNG CNCACCNNAG TNANGTNANC 
    ACNCGNNTNN CCCTNCTATA NCNCNNCATN NANNCGCNAN ANCNNANCAN 
    CNTGNNNGCA GCATNACGNA CNNANGCTCA GCGNNCANCN CANATNGGCN 
    NAACGAANCC AATCAANGAN CCNATNCNAA CAGANCNGTA TGNCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425437 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -31; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -299; Region: promoter
    Flanking Genome Sequence: 54-5195-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CATCAAAGAA AGGACAAGAA GACACACATA CGTGTGCACG TGCACTCCTT 
    AACTCCTCCC ATGTGGGATT TACAAACATA CAATAGCTGT TCTCATTATT 
    ATTATTTCCT TCTTGCCTTG CACCACCATT GTTAACTCTA TTCAATTCAA 
    AGTTTCAAAC CCTTTGACCA ATGCATCCCC TTATTGGGCT TTGATTATAT 
    GGGCCCTTTC TATTTGATAT TTTTCAATAT ATGGCCCGTT AATAAATTTA 
    ATATATAGCT TCGGCCTTAT AAANAAGAAT T

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR