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54-5248-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1238619 [Map]; Strand: w
      • AT3G04580.1 - [+] show detail - Signal transduction histidine kinase, hybrid-type, ethylene sensor
        Distance: -144; Region: promoter
      • AT3G04580.2 - [+] show detail - Signal transduction histidine kinase, hybrid-type, ethylene sensor
        Distance: -126; Region: promoter
    Flanking Genome Sequence: 54-5248-1 - 5-prime edge 
    CCGGAGAGTT GCTCAAGGCC ATAAAAATGG TGGTGTTTCA CTTTAAGCTA 
    CCANCCCGGG CCGTAAGANC ANGCGTGCNC TATAGAGTCG ANTATGACTT 
    NGATGTNATG TGTATTATCT GANTATAANA ACTAAAANNC GGATGACGAT 
    NTTANNNGCA TAAGNACGTG TNNACATGNT NNAAGANACA AAGCCAAAGA 
    NTNATNNGGA CTTTGGCTAN NCCATGAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1238503 [Map]; Strand: w
      • AT3G04580.1 - [+] show detail - Signal transduction histidine kinase, hybrid-type, ethylene sensor
        Distance: -28; Region: promoter
      • AT3G04580.2 - [+] show detail - Signal transduction histidine kinase, hybrid-type, ethylene sensor
        Distance: -10; Region: promoter
    Flanking Genome Sequence: 54-5248-1 - 3-prime edge 
    CTCTCCGGAA ATTGCTTAAG CGAAAAGTCT GCTGCTTTTG TCTTAAAAAA 
    ACTTTGAATA TTGTTGACTC AAGTCTGAAA ATCCGCAACT GAAACTCCCG 
    GAGAAGATC

AT3G04580.1

Model type
Protein coding
Short Description
Signal transduction histidine kinase, hybrid-type, ethylene sensor
Curator Summary
Ethylene receptor, subfamily 2. Has serine kinase activity.
Computational Description
ETHYLENE INSENSITIVE 4 (EIN4); FUNCTIONS IN: ethylene binding, protein histidine kinase activity, receptor activity, glycogen synthase kinase 3 activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: endomembrane system, endoplasmic reticulum membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: Signal transduction histidine kinase, hybrid-type, ethylene sensor (TAIR:AT3G23150.1); Has 63350 Blast hits to 57717 proteins in 2870 species: Archae - 286; Bacteria - 55528; Metazoa - 15; Fungi - 1532; Plants - 2041; Viruses - 18; Other Eukaryotes - 3930 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04580.2

Model type
Protein coding
Short Description
Signal transduction histidine kinase, hybrid-type, ethylene sensor
Curator Summary
Ethylene receptor, subfamily 2. Has serine kinase activity.
Computational Description
ETHYLENE INSENSITIVE 4 (EIN4); FUNCTIONS IN: ethylene binding, protein histidine kinase activity, receptor activity, glycogen synthase kinase 3 activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: endomembrane system, endoplasmic reticulum membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: Signal transduction histidine kinase, hybrid-type, ethylene sensor (TAIR:AT3G23150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR