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ET12062

CSHL Arabidopsis genetrap mutant lines

Original: ET12062

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12062

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10603664 [Map]; Strand: c
      • AT3G28345.1 - [+] show detail - ABC transporter family protein
        Distance: -4889; Region: intergenic
      • AT3G28350.1 - [+] show detail - similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar...
        Distance: -4695; Region: intergenic
    Flanking Genome Sequence: ET12062 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATAAACA 
    TCGATTTAAA CTATACGATT TGGTATAAAT GTCGATGAAC TAACCGCTAG 
    GTTTTATAGC CGATTTGACC CCACGACCGG GTATAAAAGT TGATGACTCG 
    ACAGCCGGGT ATAAAACCGC TATTATAAAG GCATGTCCAA TTTCACATGT 
    GTTACCACAT ATGAGCTTGC CGGAAGTATT GGAAAACATG TGACACAATA 
    TATATCATAG ATATGGGATA AAAGAATAAA TGATCAAACA TATGAAGTTT 
    TAATATATAT CCACATTCTT TACAATCATA GACTTTATCT TCAATCCACT 
    GGCATAATCC CATCAAGATT GATTTATATA AATTTGATTT ATCTTTTCTC 
    GAAATCCCAG CGAGATCCCA AAACATGGAG GCCGGCCGAG AAGAAAACAC 
    AATATGTTTC ATGAGTTATA TAGTTAATTT GGAGAGGTAT AAATGAAAAG 
    GTCTTTGAGG ATGTAGTTAG GGAACCACCC GATATAATTA GTCATGTGTT 
    AAGTGACAAT AATTTTTGGA AAAGCCCAAA TTATCCACAT ACGTATATTT 
    AATGAGATCT AGTTACTTAG TAAGAAGTCC TTGAAAGCTT TTTGGCCAAG 
    TAGATGGCTT TTGGAAGGAA ACAATAGTTC CCACCCCATG ATTAGGATGT 
    GTTTGTTTTC GGCTGGATGA TAAGACAATG ACTTTGGGAG TCTAATATGA 
    AACAAAGAAT CTCTCGCCTC TTCTCTCAGA ACTAAAGTTC TTGGTTTAGT 
    TGTTTCAAAT TTCTCGTGAG ATATATAGAT TGTCAA

AT3G28345.1

Model type
Protein coding
Short Description
ABC transporter family protein
Computational Description
ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28350.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT3G28350; unknown protein
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar to hypothetical protein OsI_021564 [Oryza sativa (indica cultivar-group)] (GB:EAZ00332.1)
Link
InterPro Scan - TAIR