1. Home
  2. Mutant Lines
  3. ET12072

ET12072

CSHL Arabidopsis genetrap mutant lines

Original: ET12072

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12072

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10603655 [Map]; Strand: c
      • AT3G28345.1 - [+] show detail - ABC transporter family protein
        Distance: -4880; Region: intergenic
      • AT3G28350.1 - [+] show detail - similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar...
        Distance: -4704; Region: intergenic
    Flanking Genome Sequence: ET12072 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ATATAAACAT CGATTTAAAC TATACGATTT GGTATAAATG TCGATGAACT 
    AACCGCTAGG TTTTATAGCC GATTTGACCC CACGACCGGG TATAAAAGTT 
    GATGACTCGA CAGCCGGGTA TAAAACCGCT ATTATAAAGG CATGTCCAAT 
    TTCACATGTG TTACCACATA TGAGCTTGCC GGAAGTATTG GAAAACATGT 
    GACACAATAT ATATCATAGA TATGGGATAA AAGAATAAAT GATCAAACAT 
    ATGAAGTTTT AATATATATC CACATTCTTT ACAATCATAG ACTTTATCTT 
    CAATCCACTG GCATAATCCC ATCAAGATTG ATTTATATAA ATTTGATTTA 
    TCTTTTCTCG AAATCCCAGC GAGATCCCAA AACATGGAGG CCGGCCGAGA 
    AGAAAACACA ATATGTTTCA TGAGTTATAT AGTTAATTTG GAGAGGTATA 
    AATGAAAAGG TCTTTGAGGA TGTAGTTAGG GAACCACCCG ATATAATTAG 
    TCATGTGTTA AGTGACAATA ATTTTTGGAA AAGCCCAAAT TATCCACATA 
    CGTATATTTA ATGAGATCTA GTTACTTAGT AAGAAGTCCT TGAAAGCTTT 
    TT

AT3G28345.1

Model type
Protein coding
Short Description
ABC transporter family protein
Computational Description
ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28350.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT3G28350; unknown protein
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar to hypothetical protein OsI_021564 [Oryza sativa (indica cultivar-group)] (GB:EAZ00332.1)
Link
InterPro Scan - TAIR