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ET12214

CSHL Arabidopsis genetrap mutant lines

Original: ET12214

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12214

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6377841 [Map]; Strand: c
      • AT5G19080.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -498; Region: promoter
    Flanking Genome Sequence: ET12214 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCTTCCG TTTTCATCCC TAATTATTAT 
    ACACAAAATC TGTTATGCAT AAATTGAATA TATGGGTATA TTAATAACCA 
    AAATTAGCTT TTATAATATT GGCTCAACTA TTTTGGACTA TTTAAAATCT 
    CATCTTAATA ACATAATTGG AAGAAAACCA AAATTAAGAT GAAATCTTGT 
    AAACTTTTAT AAATGATCTG AATATAATTT ACTAACATAA TATTCAAAGT 
    TAAGAACTTG TTGATATATG TGGTCAACTA TAAAACACCA CGTTTGAAAT 
    TCATAAGGTA TAGTTGAACT TTCATAGATT TTCTCTATCA ATAATGCTAT 
    TCGAAACGTC ATGTATGTGT GTTTTCTAGA TTTGAACAAG AAGAAACGGT 
    CTTGTCTCTT TCGTTAGACG GTCATGTCTC TTCGGGAACA TCCGATTAAA 
    AAAAAAGT

AT5G19080.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G06140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR