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Mutant Lines
ET12257

ET12257

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET12257

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 9562424 [Map]; Strand: c
  - AT4G16990.1 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron4 (CDS)
  - AT4G16990.2 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron4 (CDS)
  - AT4G16990.3 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron5 (CDS)
  - AT4G16990.4 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron5 (CDS)
  - AT4G16990.5 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron5 (CDS)
Flanking Genome Sequence: ET12257 - 3-prime edge
```
GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTGATA 
GTATAAAAAC GGCTAGGAGA TAGGTTAAGT CTCTCGTACT GGCCCATTCG 
TTTCCACGTT TTCGATGAAG ATCTGGATAA GAATACATCT TATGTTGTTA 
GTTTTTTCCA ATTTGGTATT TGCATTTAGA TGGTGCATGC AAACCCAATT 
GTGTACCAAA AAATTCTAGA TATTTTGGAT GCACAAAAAA CTATATCACA 
TCACATGCAA
```
5 prime edge [+] show sequence
1. Chromosome: 4; Position: 9562361 [Map]; Strand: c
  - AT4G16990.1 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron4 (CDS)
  - AT4G16990.2 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron4 (CDS)
  - AT4G16990.3 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron5 (CDS)
  - AT4G16990.4 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron5 (CDS)
  - AT4G16990.5 - [+] show detail - disease resistance protein (TIR-NBS class), putative
    Distance: 0; Region: intron5 (CDS)
Flanking Genome Sequence: ET12257 - 5-prime edge
```
CTTTATCCCT GCTATAATAT CTTCCCGCAA TACGATATTG TATTAAAACA 
TAGGGGTATA TCCCAACGTA GCAAACTTTC TTACCACCAC CATCAGTTGA 
GCTATCTATG CCACATATAT TGTACTTCTT GCACACTCTT TCCAAATTTT 
CATACCACCA TATTTTTGCT TGTTGCGCCA TGCTTCGACT GTAAACAACC 
ACTTATTGTT AGATTGATTG ATACAAATCC TAGATTATTA CTTATGATCC 
CAACAGATTA CTATGCAAAA AGAAAGGGTA GCATTGTATA AGCTTAGAGC 
CCACATTACT TGTAGCTCAA ATGTTTGAGA ATTGTCGTTC CGTCACTGCG 
GATGTTAAGT AATATAGACA CGCCTAGTGC CAAGTGGATC CACTCTGCCT 
TCACCTGGGA ATTTGAACCT GCATGCATGT GTTTGAGGGA ATTATCAGCA 
ATAATGGTAA TTTCAGTGTT AACACTATCT CCATGCAATA ATTTTTAATA 
TTGATTTTTT CTCACCATTG GTTAAACACC CAACGTAATC TTGGACCTTT 
GCCATCTAAC TCATCATAGC TGATTTTTAG TTCA
```

AT4G16990.1

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS class), putative
Computational Description: RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6513 Blast hits to 6293 proteins in 179 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6507; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16990.2

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS class), putative
Computational Description: RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6697 Blast hits to 6313 proteins in 180 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16990.3

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS class), putative
Computational Description: RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 5933 Blast hits to 5673 proteins in 173 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5931; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16990.4

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS class), putative
Computational Description: RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16990.5

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS class), putative
Computational Description: RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR