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ET12631

CSHL Arabidopsis genetrap mutant lines

Original: ET12631

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12631

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27836331 [Map]; Strand: w
      • AT1G74020.1 - [+] show detail - strictosidine synthase 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET12631 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AGTGCGATGG TACTATTGGA ACGGCTTTAG CCGGACGCTG TGGTCGACCA 
    GCAGGAATAG CATTCAACGA GAAAACAGGT GATCTTTACG TCGCCGATGC 
    TCCGTTGGGT CTTCACGTTA TTTCTCCCGC CGGTGGTTTG GCTACGAAGA 
    TCACCGACAG TGTTGACGGA AAGCCTTTCA AGTTTCTTGA CGGTCTTGAC 
    GTTGATCCCA CTACTGGTGT CGTCTACTTC ACTTCCTTCA TCTCACTCGA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12631 - 5-prime edge 
    ATCCTACTTA TCCCTGAACA GAATCTTCTA GTTCTTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1858760 [Map]; Strand: c
      • AT3G06140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G06142.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -617; Region: promoter
    Flanking Genome Sequence: ET12631 - 5-prime edge 
    CACTGTTGTG CTTTCTGTCT TGTCTCTGTC TTTCCCATTG TCATTCTCTC 
    ACCAATGGGA ATCTCCTTTA GCAACAACAA CAGAAGACGA GACAACAATA 
    ATCGTCGCCA CCTCCACCAC TATCCTCCGC CGCCGCCTTA CTATTACCTC 
    GACCCTCCTC CTCCTCCTCC GCCATTTCCA CCGCATTATG ACTATAACTA 
    CTCCAATTAC CATCTCTCTT CGCCT

AT1G74020.1

Model type
Protein coding
Short Description
strictosidine synthase 2
Curator Summary
Encodes AtSS-2 strictosidine synthase.
Computational Description
strictosidine synthase 2 (SS2); INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT1G74010.1); Has 965 Blast hits to 955 proteins in 193 species: Archae - 1; Bacteria - 188; Metazoa - 217; Fungi - 5; Plants - 466; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06140.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19080.1); Has 7743 Blast hits to 5478 proteins in 376 species: Archae - 2; Bacteria - 144; Metazoa - 2405; Fungi - 531; Plants - 3352; Viruses - 272; Other Eukaryotes - 1037 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06142.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR