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ET12648

CSHL Arabidopsis genetrap mutant lines

Original: ET12648

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12648

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11446387 [Map]; Strand: c
      • AT1G31880.1 - [+] show detail - DZC (Disease resistance/zinc finger/chromosome condensation-like region) doma...
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: ET12648 - 3-prime edge
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTGAGTGAG 
    TAATAAACAA AACCCACTAA TCAAAATTTT ATTTTTTGGA TTGTAATGAT
    TAAGAAAAAA AGAAGAAGTC GTTTTCTGAG GTGAGAATAA TAATGGGGTT
    TGTATCAGTT TGCCTTTGCT TTTGATATCA AAACAGAGTT TTTTCGTGAT
    TCGTGATTGT TTTTGCGATT TTATCTTTTT TACTTTGGAT ATAGTTTTAG
    TTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11446297 [Map]; Strand: c
      • AT1G31880.1 - [+] show detail - DZC (Disease resistance/zinc finger/chromosome condensation-like region) doma...
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: ET12648 - 5-prime edge
    TTTCGATATC TGAGAAATGA AGCGATATGA TCTGAGATTA TTGAGATACT 
    AGATAGCTAG CTTCTGCTTT ATTTTCCTCT TGAAGGCTTT GGTCTATTTA
    GGAAGCCGGC ACGAGTGGGG TTAGTTCTGA GTCTACGTCT ATAAATAGAC
    CATCAATGGC TGCAGAGAAG ATTAGTGTAG TAGTGTTACA GACAGTAATT
    GTAATAAATG TGTTACAAAA GGACGAAAAC AATTTATGAT ACTACAATTT
    TGCTTTTAAT GTTTTTGAGA AAAAATTCGG CGTTTTCTCA AAAAAGTAAA
    AGAACAATAA ATACCGGGAA ACTTTTGAAT GAAAATGAAA ATTTATATTA
    ATATTGAAGA ATGAATACAC ATTTTTCGGT AAAGTTTCTG ATTTGGGTTT
    AGTGAGAAAA TTTTGGTATT AATCAGAAAA AAATGACGAA TCGAATCTGT
    CTAAATCAAA TCAATCAAGT GACAAATGTT TGCAGAAAAA GGTAACGCAA
    AAAAAAAA

AT1G31880.1

Model type
Protein coding
Short Description
DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
Curator Summary
Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.
Computational Description
BREVIS RADIX (BRX); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BREVIS RADIX-like 1 (TAIR:AT2G35600.1); Has 707 Blast hits to 407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR