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ET12670

CSHL Arabidopsis genetrap mutant lines

Original: ET12670

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12670

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5538620 [Map]; Strand: w
      • AT2G13350.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -739; Region: promoter
    Flanking Genome Sequence: ET12670 - 3-prime edge 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCTT TCCATACGCT 
    GTTACTCCAC AGATTTAATC TTTATACATC ATGATGAATA CTTTCACTGC 
    ATAGCATTTT CTTTTAAAAA AGATTGGGTT AAGTATCATT CGATCTTCTA 
    CCCAATTGGA CAGTCGTTAT TTATGAACCA TGGCTACCTT CCTAGAGATA 
    GCTAGATGAG TACCCATAGA GAACCAACGG CTCATATTTA GACACAATAG 
    CACTCATTCT TATTCAATCA ACTAAAATGG CTATGTACGG AC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17506323 [Map]; Strand: c
      • AT2G41930.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 3639; Region: intergenic
      • AT2G41940.1 - [+] show detail - zinc finger protein 8
        Distance: -1186; Region: intergenic
    Flanking Genome Sequence: ET12670 - 5-prime edge 
    TTCCATCCTA CTTTATCCCT GGATCACATC ATCTTATCAA TATGTATGTA 
    ATCTGTTAAT ACTTATCAAC TCGGATCGAT CATATACACG ATCTTCTTCA 
    AATGAACTAT ATATGTATAT GTAGTCTCTT TTTGTGCGTC TACACTAAAT 
    TTTTTGATAT TTTGTAAGAA TAATTCAATT TTAAATCCCA GTAGTTTTGG 
    ATTATATATA TTCCCTGATT ATGTCACACA AATAATGTAT ATGTTGCTAA 
    TCGTCAAGGT GGAATAAGGA CTATAAAACT CATTAATCCA TAAATTAATC 
    TGACCTTTTT CA

AT2G13350.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 331 Blast hits to 320 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 329; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41930.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G42550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41940.1

Model type
Protein coding
Short Description
zinc finger protein 8
Curator Summary
Encodes a zinc finger protein containing only a single zinc finger.
Computational Description
zinc finger protein 8 (ZFP8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G58070.1); Has 1033 Blast hits to 1031 proteins in 54 species: Archae - 0; Bacteria - 9; Metazoa - 26; Fungi - 10; Plants - 958; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR