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ET12680

CSHL Arabidopsis genetrap mutant lines

Original: ET12680

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12680

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5220306 [Map]; Strand: w
      • AT1G15165.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -193; Region: promoter
      • AT1G15170.1 - [+] show detail - MATE efflux family protein
        Distance: -335; Region: promoter
    Flanking Genome Sequence: ET12680 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAAAAAAAT 
    AACTAAATTG CTGGTCCATT CTCCAAAGGC TGTTTTTGTT TTTGTTTTCT 
    CTTTTATACT TGGTTACACT TACACAAGTG GTTGAAAGAA GATAAAATAA 
    TGATATCCTG ATCGTCCACG TGTCAAAACA TATGAACGGA ATCAAATTAG 
    GTGCATAGAG CTAAAAAATA CCGAACCAAT CGGACCGCCC TTTTCTACCG 
    CCGACGGTCA CATAGAGACC CAAATCTCTC CGCCGTGTCC CATGCGCACT 
    TTAGCCACTC CCTCTCCCCC ATGTTTATCG TGTTCCATGT TTAGCCATGT 
    CCGCTTCTGC CGCAATAGCC GTGTCGTATC CACCGCCGCC GTAGTATCTC 
    CAGCTCTGAG TTCTGGAAAA TTGTTTTAGG TTCGTCGATA CTGTTCTTTG 
    GTGGCATTGC CAATGCCTTC TCCTCCAGCT TTGATTCTCT TGGTAAATTA 
    CGCACGAGTG TATAATCTCT GTCGTCTATT TTTGAGTGTG TTCAGAACAG 
    AGCTGTTTTT CAGGTAACAT ATGAATTGCT CATCTATGTT ACGCTCTACT 
    TGACCACTTA GGGATTGAAT TTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5220365 [Map]; Strand: w
      • AT1G15165.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -252; Region: promoter
      • AT1G15170.1 - [+] show detail - MATE efflux family protein
        Distance: -276; Region: promoter
    Flanking Genome Sequence: ET12680 - 5-prime edge 
    TCCTACTTTC TCCCTGATTT TTTTAGCTAC TTCCAAGAAA CTTTACCAGC 
    TTCGCATCCA TATAGTAGTA TTTTATAACG AACTACCTTT CGTCCATTCA 
    ATAGAATGAC TAATAGATTG AAAAAGAGTG TGGATGATAA AAAGGTCAAA 
    ATACAGATTC ATATCACTCA ACAACGAGAT CCCAAACAAA TTTGCATTTT 
    TAAAATAAAA ATATTTCATT GAAATCTAAG CCAAAGTTTA ATATTATTTC 
    ATTTACGGGG TTTGGGAAGA TTCGTCGAAG GAGGACATGC AGGCACAAAT 
    CACAAATATC ACTCACCGCC TTTGTTTGAC CCTTTCCCCC ACAAATCATC 
    AAAATTTACT GTTTTACATT CTCTCTCTAT CACTCTGCAT TTAGCCATGG 
    GAGACGCAGA GAGCACTAAG GATCGCTTGC TGCTGCCGGT AGAGAGAGTC 
    GAGAACGTGA CATGGAGCGA TCTGCGAGAT GGTTCATTCA CCGTAGAACT 
    CAAAAGGCTT ATCTTCTTCG CCGCTCCTAT GGCTGCTGTT GTTATCGCTC 
    AGT

AT1G15165.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 427 Blast hits to 408 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15170.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15180.1); Has 8903 Blast hits to 8835 proteins in 2013 species: Archae - 124; Bacteria - 6072; Metazoa - 149; Fungi - 330; Plants - 1330; Viruses - 0; Other Eukaryotes - 898 (source: NCBI BLink).
Link
InterPro Scan - TAIR