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ET12685

CSHL Arabidopsis genetrap mutant lines

Original: ET12685

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12685

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26762009 [Map]; Strand: w
      • AT1G70980.1 - [+] show detail - Class II aminoacyl-tRNA and biotin synthetases superfamily protein
        Distance: -330; Region: promoter
    Flanking Genome Sequence: ET12685 - 5-prime edge 
    CTTTCTCCCT ACTCATCCTA AGCTTCTTCC ATGATACGAG CGTGGTGGTC 
    TCCTATTGGA GAAGTTCGAC TTTAAGTACT TTCCGATCAC CGGCAGTCAA 
    TATCTCTGAC GAGATTTTAC ACGATTCGCC GAAAGTTGGA CCGTCATCGG 
    TTGGGACCGG GTCAGAGTTA GACTCTGTAG AGACCCGAAT CGGAGAGGAA 
    GTGAAGGCCC ATGAATAAGC CCATACAATT ACAATTCCAA GGAAAAGAAG 
    TATACAAAGA CACGTTTTGG AGCTGCGTAA ACTGTCCCCA TAATCCTTTG 
    CCATCAACAA CTTCGATTCC GGGGACTACA AGCCTCTGTC TTCTCTCTCG 
    TTTAGGGTTT TATTCCAAAA TTCCGTGCTT CGATCCCGAA GATCAGAAAA 
    AATGGGTGAT GAGATTGTGC CTCCGGCGAA TCAGTTAGCC GCCGATAACT 
    TGGAAAACGA TGGATCTACG GTGCAGAAAG CGCAATTTTC AGACAGGGTT 
    CTGATTCGAT CGATTTTGGG CGGCGGAGCT AAACTCGCCG GTCAAAAGGT 
    TAGAATCGGT GGTTGGGTTA AAACCGGAAG ACAGCAAGGG AAAGGGACTT 
    TTGCTTTCCT TGAGGTTAAC GATGGGTCTT GTCCAGCGAA TCTCCAGGTT 
    ATGGTTGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26762016 [Map]; Strand: w
      • AT1G70980.1 - [+] show detail - Class II aminoacyl-tRNA and biotin synthetases superfamily protein
        Distance: -323; Region: promoter
    Flanking Genome Sequence: ET12685 - 5-prime edge 
    CCTACTCTCC ATAAGCTTCT TCCATGATAC GAGCGTGGTG GTCTCCTATT 
    GGAGAAGTTC GACTTTAAGT ACTTTCCGAT CACCGGCAGT CAATATCTCT 
    GACGAGATTT TACACGATTC GCCGAAAGTT GGACCGTCAT CGGTTGGGAC 
    CGGGTCAGAG TTAGACTCTG TAGAGACCCG AATCGGAGAG GAAGTGAAGG 
    CCCATGAATA AGCCCATACA ATTACAATTC CAAGGAAAAG AAGTATACAA 
    AGACACGTTT TGGAGCTGCG TAAACTGTCC CCATAATCCT TTGCCATCAA 
    CAACTTCGAT TCCGGGGACT ACAAGCCTCT GTCTTCTCTC TCGTTTAGGG 
    TTTTATTCCA AAATTCCGTG CTTCGATCCC GAAGATCAGA AAAAATGGGT 
    GATGAGATTG TGCCTCCGGC GAATCAGTTA GCCGCCGATA ACTTGGAAAA 
    CGATGGATCT ACGGTGCAGA AAGCGCAATT TTCAGACAGG GTTCTGATTC 
    GATCGATTTT GGGCGGCGGA GCTAAACTCG CCGGTCAAAA GGTTAGAATC 
    GGTGGTTGGG TTAAAACCGG AAGACAGCAA GGGAAAGGGA CTTTTGCTTT 
    CCTTGAGGTT AACGATGGGT CTTGTCCAGC GAATCTCCAG GTTATGGTTG 
    AT

AT1G70980.1

Model type
Protein coding
Short Description
Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Computational Description
SYNC3; FUNCTIONS IN: in 6 functions; INVOLVED IN: asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT5G56680.1); Has 17935 Blast hits to 13295 proteins in 2647 species: Archae - 620; Bacteria - 13541; Metazoa - 618; Fungi - 807; Plants - 214; Viruses - 0; Other Eukaryotes - 2135 (source: NCBI BLink).
Link
InterPro Scan - TAIR