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ET12698

CSHL Arabidopsis genetrap mutant lines

Original: ET12698

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12698

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12698 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AGGAGCAGGA GACGCGTCAC ACAATTCGCA GAATGTATAC GTTGTTGCTA 
    CTCTTCATCT CACTCGACCA TCTTGGAAAA AAAAGGTTTT TTTTTATAAA 
    AAAAAAATTT AAAAAAACCC GTTTTCCGGG GGGGGGTAAA AAAGGGACTT 
    AAAAATTTTC CCGTCGGAAA AATCCAAATG GAAGCTTACC CCAAAAAAAC 
    CCTTTTTTTG GCCTTTGGGG TTCCAAGGGT TTTAGGTTTC CCCCCCCCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1159317 [Map]; Strand: w
      • AT3G04370.1 - [+] show detail - plasmodesmata-located protein 4
        Distance: -106; Region: promoter
      • AT3G04370.2 - [+] show detail - plasmodesmata-located protein 4
        Distance: -106; Region: promoter
    Flanking Genome Sequence: ET12698 - 5-prime edge 
    CCTACTTTAT CCCTGCGTGC GCTTGACGAC CTCCTAAGTC ACAACTAAAT 
    CTTTAACATA TGTAGACAAG TGGTAGACAT ACGTAGACAA AATCTAATCT 
    ACCACAACTT CCCTCTCCAT TCACCAATGT ATATATTCAA TGAATTAAAA 
    ATATATCTCT CTTCCCTGTA GTTTTGACTC AAACATGGTT GTCCACTTGA 
    CCTCTCTCCT CACACAAACC CTAGCCCTAA TCATTCTGTC TCTTCCCTCT 
    ATCATCAACA CTTCTCAACT TGATTACGAC ACTCTTGTTT TCAAACAATG 
    CGATCAATTG GACGCAAACA TCCTCCAAAA AGCAACAACA AAATCTCCAA 
    ATTACTGGAA TCAGAATCTC TTTCTTCGTG CACAAGCCCT TTCTTCTTTC 
    TTACGCAAAC TCGAATCAGA ATCCTCTCGA TCTAAATTCT TGAAGACTCT 
    AGTTGGTAAC GAAAAACACG CTGTCTCTGG ATGGTTCCAA TGCAGAGAAG 
    ATTATCCGAG TGAGATCTGC CATAAATGTG TTGGTGATCT TCGTGAAATT 
    TCGTCTAGAT TGTGTGGAAA TGCTACGTCA GCTC

AT3G04370.1

Model type
Protein coding
Short Description
plasmodesmata-located protein 4
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 4 (PDLP4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 3 (TAIR:AT2G33330.1); Has 317 Blast hits to 313 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04370.2

Model type
Protein coding
Short Description
plasmodesmata-located protein 4
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 4 (PDLP4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 2 (TAIR:AT1G04520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR