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ET12713

CSHL Arabidopsis genetrap mutant lines

Original: ET12713

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12713

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1551964 [Map]; Strand: c
      • AT1G05310.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET12713 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TAGAATCACC 
    ACTTTTTCAC TGCCATGCAA TACTTATATA TCATTTACTT ATATAGATTT 
    CTTAATTGTT ATTGTAGTAA CTAAATCGAC AACATACTAG TACATGCCGG 
    AGTTTATCCA AATCACGTTC CTTCTTTGAC TGAAATTCCC CACTGCGTCC 
    ACGGCCGATT GCACCGTCGT GAAATTGCAG CAACCGTTCT TATCCACGCA 
    GAAATAGGAT GTTGTGTCGG TGTCCAATGG AGGTATATTT TTAGGGAAGT 
    CGTCGCATAT TGATACCTTT CTTTTGGTAT CCGAAGGTTT ATGCCGGTGG 
    TGGTGATGAT GATGGTGATG GTGATCACAT AAGGATTTCT TGAATGAATA 
    TGATATTGCT TTGATACCAA AAGCTTCAGG ATGTGTTTTA AAGAGAGTTT 
    TAGATGCCAG AACGGCAATT ATTGCGATAC CTATGGATAT GGATAATGAG 
    ATTATTTTCA TACCTGAATA ATAGAAGATA ATTCTGTGAA AC

AT1G05310.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 4576 Blast hits to 3466 proteins in 439 species: Archae - 11; Bacteria - 724; Metazoa - 994; Fungi - 355; Plants - 1773; Viruses - 6; Other Eukaryotes - 713 (source: NCBI BLink).
Link
InterPro Scan - TAIR