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ET12726

CSHL Arabidopsis genetrap mutant lines

Original: ET12726

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12726

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10934239 [Map]; Strand: w
      • AT4G20240.1 - [+] show detail - cytochrome P450, family 71, subfamily A, polypeptide 27
        Distance: -27; Region: promoter
    Flanking Genome Sequence: ET12726 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AAATCACACC ATTCCTAAAT AAGCACAATA TGGAGATGAT ATTAATCTCT 
    TTGTGCTTAA CCACCTTATT AGCATTTCTC TTCCTAAAAC CACTCCTCAA 
    ACGAATCACC ACCACCAAAC CTAAGTTACC ACCGTCTCCA TGGCGGCTTC 
    CGGTGATTGG AAACCTCCAC CAGCTCGGTC CCAACCCTCA CCGCTATCTC 
    CATTCCCTCA GCCTCCGGTA TGGGCCACTC ATGCTTCTTC ATCTCACTCG 
    A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15810389 [Map]; Strand: c
      • AT4G32780.1 - [+] show detail - phosphoinositide binding
        Distance: 0; Region: intron3 (CDS)
      • AT4G32785.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Plec...
        Distance: -677; Region: promoter
    Flanking Genome Sequence: ET12726 - 5-prime edge 
    CACTTTCTCC CTGGTAATAG TCACTTGGCG AGGAGTAGTC TAATTGACTA 
    GTATATATTA TTATATTCTC CAGACATAAC ATATTAATCC GAATCTAAAA 
    ATCCAATAAA ACTAGAACCG AATTCATGTA ACGGGTAGAT CTAGCCAAAT 
    TGATGTTTGA CATTATATTT GAGTTTTCTC AAATGAAGTC CTTCTTTTTG 
    TCAGCAATTA TTTCGAACGT AAAAAAAAGT TAACCATAGA ATTTCCGCTC 
    ATTGCACATT ACTCACTGTG TTACCCTTTT TATTATTTCA AAAAGAAAAG 
    GATATGGATT GAATAAACAA TTGCATGATT TCATCATGAC AATTATAATG 
    CTTTCTCTTT TCTCTCGGTT AATTTTTATA ATCAACGAAA AAGTTCCGAA 
    ACCAACCAGC TTTTTTTCAT TCTTTACGTC GACTCCTTTT AATAAAGATA 
    TGATTTGATT TGAGACAATG ATAAACCGGA AACCCCCCGG TTTAATAGAT 
    CATATATA

AT4G20240.1

Model type
Protein coding
Short Description
cytochrome P450, family 71, subfamily A, polypeptide 27
Curator Summary
putative cytochrome P450
Computational Description
"cytochrome P450, family 71, subfamily A, polypeptide 27" (CYP71A27); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 20 (TAIR:AT4G13310.1); Has 27160 Blast hits to 26983 proteins in 1467 species: Archae - 44; Bacteria - 2315; Metazoa - 10770; Fungi - 4604; Plants - 8614; Viruses - 3; Other Eukaryotes - 810 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32780.1

Model type
Protein coding
Short Description
phosphoinositide binding
Computational Description
phosphoinositide binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT5G43870.1); Has 405 Blast hits to 233 proteins in 34 species: Archae - 2; Bacteria - 17; Metazoa - 10; Fungi - 2; Plants - 172; Viruses - 6; Other Eukaryotes - 196 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32785.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: FORKED 1 (TAIR:AT3G63300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR