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ET12865

CSHL Arabidopsis genetrap mutant lines

Original: ET12865

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed); semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12865

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16388592 [Map]; Strand: w
      • AT4G34230.2 - [+] show detail - cinnamyl alcohol dehydrogenase 5
        Distance: 0; Region: exon1 (CDS)
      • AT4G34230.1 - [+] show detail - cinnamyl alcohol dehydrogenase 5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET12865 - 3-prime edge 
    CCGACGTTAC CGACCGTTTT CATCCCTACC CATCTGGGAT CCTCTCTCCT 
    TACACTTACA CTCTTAGGTT TTTAATTAGT TTCCTCTTCT TTTACCTCTT 
    TGTGTTTTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16388669 [Map]; Strand: w
      • AT4G34230.2 - [+] show detail - cinnamyl alcohol dehydrogenase 5
        Distance: 0; Region: exon1 (5UTR)
      • AT4G34230.1 - [+] show detail - cinnamyl alcohol dehydrogenase 5
        Distance: 0; Region: exon1 (5UTR)
      • AT4G34240.1 - [+] show detail - aldehyde dehydrogenase 3I1
        Distance: -951; Region: promoter
      • AT4G34240.2 - [+] show detail - aldehyde dehydrogenase 3I1
        Distance: -951; Region: promoter
    Flanking Genome Sequence: ET12865 - 5-prime edge 
    CCTACTTTCT CCCTGCAGGT CTCTGGCAGC CCAGCCTGTT GTTTTCCTCT 
    CTGCCTCCAT TATTCCCATT TTTTGATGAT TCTTTCTTCT TTCTTATCTT 
    GATCTGCTGC TTTCACGCTT TTGCTGTTTA TGTGTGTGTA TTACTATATA 
    TATATAGAGA AAGTTGGAAA CGTAACGTAT GCGTATGTGT GATGAAATAA 
    TTGGTGTTTC TGCATAGCAC ACATTTGATG GCTATAATTG AGTGTAAATT 
    TGTGTATATT ATTGACAAAA TTAGTCAAAA GCTTAAAATC TTTTTTAGTC 
    GTTGAAAGAT CCTTCTAGAA AAAGACATTT TTTTTCTTCT

AT4G34230.1

Model type
Protein coding
Short Description
cinnamyl alcohol dehydrogenase 5
Curator Summary
Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
Computational Description
cinnamyl alcohol dehydrogenase 5 (CAD5); CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT3G19450.1); Has 41203 Blast hits to 41171 proteins in 3032 species: Archae - 764; Bacteria - 27799; Metazoa - 1384; Fungi - 3121; Plants - 2810; Viruses - 3; Other Eukaryotes - 5322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34230.2

Model type
Protein coding
Short Description
cinnamyl alcohol dehydrogenase 5
Curator Summary
Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
Computational Description
cinnamyl alcohol dehydrogenase 5 (CAD5); CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT3G19450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34240.1

Model type
Protein coding
Short Description
aldehyde dehydrogenase 3I1
Curator Summary
Aldehyde dehydrogenase induced by ABA and dehydration
Computational Description
aldehyde dehydrogenase 3I1 (ALDH3I1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 3H1 (TAIR:AT1G44170.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34240.2

Model type
Protein coding
Short Description
aldehyde dehydrogenase 3I1
Curator Summary
Aldehyde dehydrogenase induced by ABA and dehydration
Computational Description
aldehyde dehydrogenase 3I1 (ALDH3I1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 3H1 (TAIR:AT1G44170.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR