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ET12868

CSHL Arabidopsis genetrap mutant lines

Original: ET12868

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12868

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13898092 [Map]; Strand: w
      • AT1G36720.1 - [+] show detail - transposable element gene
        Distance: 9206; Region: intergenic
      • AT1G36730.1 - [+] show detail - Translation initiation factor IF2/IF5
        Distance: 118; Region: intergenic
    Flanking Genome Sequence: ET12868 - 5-prime edge 
    CTTTCTCCCT GGCCATGACA TACTTATTAT TCAACAAAAC AAAGAAGTTA 
    TTTCTTGGTA CCTGCCTCAG CTGCACCTAC GGAATTACAG ACCATCGACG 
    ATTTTCGAGT GTCTAGTTTC TTTGTGTTTG TTCTTCTTTT GGTGTGATCG 
    ACAGGTAATG TACACTTCAA CAAGTAGTAT TAAAGTTTAG GCCTAAGTTA 
    TGGCGATCAA TCGAGAGATA TAGCCAAAAT TTACAGTTTA AATCAGAGAT 
    CGTAGTCGAA GAAAGAAACA AGATCGTGAA ATTGTCGATC CAGATCCTCA 
    TATGTTAGAG ACATTCAAAC AGAACCCTGG ATCAACTTGA AACAAAGATC 
    TGTTTTAGTA ACCCTCAACA ATACCTAATA TGTTTAATCG AATTAAACAC 
    AAAGGAATCG TCACAGTAGT TCTAAGAAAA GTAGTAACCA TAAAACCAAA 
    GCATACAACT TATACAACAT AAGTTGTCTA AGTCATGACA AATACAAAGG 
    GACAAAACAT AAACAAACCA TCAACAGAGA GACCAGTGAC TAGTGTTACT 
    TAACAAGTAG AAGTAACCTT TGCCAGTGTC CTCTTACCTT ATTC

AT1G36720.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.3e-308 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT1G36730.1

Model type
Protein coding
Short Description
Translation initiation factor IF2/IF5
Computational Description
Translation initiation factor IF2/IF5; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT1G77840.1); Has 6371 Blast hits to 4946 proteins in 714 species: Archae - 245; Bacteria - 804; Metazoa - 2020; Fungi - 758; Plants - 416; Viruses - 40; Other Eukaryotes - 2088 (source: NCBI BLink).
Link
InterPro Scan - TAIR