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ET12872

CSHL Arabidopsis genetrap mutant lines

Original: ET12872

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12872

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 590204 [Map]; Strand: c
      • AT2G02220.1 - [+] show detail - phytosulfokin receptor 1
        Distance: -3080; Region: intergenic
      • AT2G02230.1 - [+] show detail - phloem protein 2-B1
        Distance: 17; Region: intergenic
    Flanking Genome Sequence: ET12872 - 3-prime edge 
    TGTATGGATG TGGAAACAGG AAACAGAACA AAGATAGTCA CAATGGTGAA 
    ATGAATGGGA AACATAAGAA TCATGAACCA TCTTTCTTCT TGCTATTCAG 
    ACATTAGTAC ACAAGATAGA GAATTATCAA CTTCTCTGCT ATTTCATATC 
    AAGAACTCCA AACTGTAAGT AAACTCGAGA CATTAGAAGA CATGTTTTTA 
    AAACTGTGTT TCATACTTCA AAATACACAA TTTGATCAAA ATCAGTTGCT 
    TCTTTCAAGC CTGATCTCAA TTCCCTGAAT AATCAAACCA CTCTTC

AT2G02220.1

Model type
Protein coding
Short Description
phytosulfokin receptor 1
Curator Summary
Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).
Computational Description
phytosulfokin receptor 1 (PSKR1); FUNCTIONS IN: peptide receptor activity, protein serine/threonine kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phytosylfokine-alpha receptor 2 (TAIR:AT5G53890.1); Has 188205 Blast hits to 128830 proteins in 4018 species: Archae - 120; Bacteria - 18455; Metazoa - 56562; Fungi - 9680; Plants - 79633; Viruses - 405; Other Eukaryotes - 23350 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02230.1

Model type
Protein coding
Short Description
phloem protein 2-B1
Computational Description
phloem protein 2-B1 (PP2-B1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 552 Blast hits to 533 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 552; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR