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ET12938

CSHL Arabidopsis genetrap mutant lines

Original: ET12938

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12938

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5297851 [Map]; Strand: c
      • AT1G15400.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -969; Region: promoter
      • AT1G15400.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -949; Region: promoter
      • AT1G15410.1 - [+] show detail - aspartate-glutamate racemase family
        Distance: -473; Region: promoter
    Flanking Genome Sequence: ET12938 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTCA GGCCCATCCA 
    TAAATACAAT TGTCAAAAAG AAAATAAAAA ATTGGAGGCC CAGCTGGGAA 
    CGAGCCACCA GGCCATGGGG AATCTGAGTG GCGTCGAGCT GTGATCCGTC 
    CACTGCTGAG AGCGGGAGGC GATCGCTGCT CTGTGAAACC AGCCTCACGC 
    ATTGCCCTCC ACTGCAAGAA CCGCCTGAGC CAAGCCTTCG CTTAACACAC 
    ACGGATCACT CACAGCTTGG ACTGGGCAGC CCGGAACAAT GCCACAACAG 
    ATCCGACCCG TGGGCCGAGC CAGTGTCCCA CCAACTTATT GTCCCCACAC 
    GGGTCACAAG CCCACGTTAC TGAGCTCGAC GTACAAGCAT TGATTTAATT 
    GCATATATAA AGTAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6924532 [Map]; Strand: c
      • AT2G15890.2 - [+] show detail - maternal effect embryo arrest 14
        Distance: -2507; Region: intergenic
      • AT2G15900.1 - [+] show detail - Phox-associated domain;Phox-like;Sorting nexin, C-terminal
        Distance: -2858; Region: intergenic
    2. Chromosome: 1; Position: 26170635 [Map]; Strand: c
      • AT1G69572.1 - [+] show detail - other RNA
        Distance: 7874; Region: intergenic
      • AT1G69580.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -1308; Region: intergenic
    Flanking Genome Sequence: ET12938 - 5-prime edge 
    AGTGTATAAT CTTAAACACT AAACAATATA GATAATATCA ACAAAACATA 
    TACAACTCAC AGTTTACTAT ACATTTAAAA TCAAATAAAA TAATATCATA 
    TATTTTTAAA TCATCTTTAC AATAAAAGTT TTTAGTTTAA CTAAAATATA 
    AGCTTACATG CGGTATACTA CAAGTTAATA TCTAGATTAT AGGGCTTATT 
    GGATCTAAAG ACGGGGCATC AAAGATTTCC TAAACTGAAG CAAAATATAC 
    TGAATAC

AT1G15400.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15400.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15410.1

Model type
Protein coding
Short Description
aspartate-glutamate racemase family
Computational Description
aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57; Bacteria - 1708; Metazoa - 0; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69572.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G69570
Link
InterPro Scan - TAIR

AT1G69580.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1694 Blast hits to 1678 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 0; Plants - 1653; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G15890.2

Model type
Protein coding
Short Description
maternal effect embryo arrest 14
Computational Description
maternal effect embryo arrest 14 (MEE14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to fungus, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 56 Blast hits to 56 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G15900.1

Model type
Protein coding
Short Description
Phox-associated domain;Phox-like;Sorting nexin, C-terminal
Computational Description
Phox-associated domain;Phox-like;Sorting nexin, C-terminal; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT1G15240.2); Has 1078 Blast hits to 871 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 658; Fungi - 203; Plants - 141; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink).
Link
InterPro Scan - TAIR