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ET12983

CSHL Arabidopsis genetrap mutant lines

Original: ET12983

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12983

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958171 [Map]; Strand: c
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -730; Region: promoter
    Flanking Genome Sequence: ET12983 - 5-prime edge 
    CCTACTTTCT CTGTCTCTAC TAGTTTTCTT CTTCGCTATG TTCATCCAGA 
    ATCCCCGAAG GTAAGCGTAG GTTTCGTCAC AGAGATGTGG GCATCGTTAG 
    ATGCGTTTTG GCTGCTTCGA AATCTTCTCC GGGAAGTGTT ACGAAGAAGA 
    GGCTTTGGAA AGACGGCGAA TTCCCCGGAA TCACGGAGCC GGTTAATCAG 
    AGAAGAACTC CGATAAAGAA TGTGAAGAAG AAACTTGACA GGAGAAGCAA 
    AGCTAACGGA TGGGTTAACA CCGTCACTGA AACTTTGTCC GATCTCATCG 
    CCAAAAAGCA GTGGTTACAA GCTCTCGAGG TATTTCGATT TTCTCTCTTC 
    TCGTTCATGT TTGATTGAAT TTGAACTCAA TTTTGAATCA CGAAGTATAA 
    TTTAGCTGAA AGATGATTTT GATTGAATTG GGTATTTTGT TGATGATCTT 
    AGGTTTTTGA TATGTTGAGG GAACAAACAT TTTATCAACC AAAGGAAGGA 
    ACTTACATGA AGCTGCTT

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR