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ET13026

CSHL Arabidopsis genetrap mutant lines

Original: ET13026

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13026

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21473238 [Map]; Strand: w
      • AT3G57990.1 - [+] show detail - unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae -...
        Distance: -1752; Region: intergenic
      • AT3G58000.1 - [+] show detail - VQ motif-containing protein
        Distance: -1712; Region: intergenic
    Flanking Genome Sequence: ET13026 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGATATG ATACAATAGA 
    TAATGGCCGT CGGATCAAGA GTAGAGATAT GAAAGAGATC TAACGGCTGT 
    AACAGAAAAG GGAGACAGAT GGAGAGAGAG AGAGTGAGCT TGAAACTCAA 
    CGGAAAGGAT TTGGTTTTGT AGTCTGAGAG CTTTTTGTAC AAATGAGTGC 
    GTCAGAGACT CAGAGTCGAA CACACACGAG TCTTTTGCTC TCTTCTAGAT 
    TCGGCCCACA TGCGGGTAAC TAAACAACTG GATGTTAAAC ACGTGGGCAT 
    ACCTAAGCCG TATAGATTGT GGTCCTCGAT CTCCGTATGT GTTTGACGTG 
    GATCCCAGTT TCACAACTTC TTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10740566 [Map]; Strand: c
      • AT4G19740.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13026 - 5-prime edge 
    CCTACTTTCT CCGAAGAATG ACTGATTCTC AAATTCTCGG ATCCTCCTCC 
    GGACCCGTAG TAAAAGCTGC CTACTGGTTT CCGGATGGAG AAACCAAACC 
    AACCGGCAGT GAAATCCCAC AGTCCTCAGC AATCCTTATT GACTCAACTC 
    TCTTCACTCA CCTTTTCTGC GCCTTCGCAG ATCTCGACCT TGAAACCCAC 
    AGAGTCTTCA TCCCCCAAAG GCACGAATAC GAATTCTCCA CCTTCACTGA 
    AATCGTCAGG CAGAAAAACC ATAACGTGAA GACCCTCTTG TCGATCGGCG 
    GGAAAAA

AT3G57990.1

Model type
Protein coding
Computational Description
unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G58000.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G42140.1); Has 79 Blast hits to 79 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19740.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19720.1); Has 4184 Blast hits to 4027 proteins in 775 species: Archae - 13; Bacteria - 1396; Metazoa - 1408; Fungi - 971; Plants - 145; Viruses - 60; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR