1. Home
  2. Mutant Lines
  3. ET13028

ET13028

CSHL Arabidopsis genetrap mutant lines

Original: ET13028

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13028

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21376361 [Map]; Strand: w
      • AT1G57710.1 - [+] show detail - pre-tRNA
        Distance: -1972; Region: intergenic
      • AT1G57720.1 - [+] show detail - Translation elongation factor EF1B, gamma chain
        Distance: -1254; Region: intergenic
    Flanking Genome Sequence: ET13028 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG ATCCATATAT 
    ACATATGTGT CTATAAATAT ATATGTGTGT GATCAATTCC AATTTCACAA 
    AAAAAAGCAA TGGAGAGAAC ACTGTGACAA AAAAAAAAAA AAAAGAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8586556 [Map]; Strand: w
      • AT3G23805.1 - [+] show detail - ralf-like 24
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13028 - 3-prime edge 
    ACCGTTTTCA TCCCTAGCCG TTCCGGTTCA GCATTGCGTC GATTTCGCCG 
    TTTACCGACG GATTCGGAAC TGTGACGGAG ATTGAGAGAT GGGTTTGAAG 
    ACAAATTAAG GATGAGTAAA CGAGAGCTAA GGATCTAGAC ATGTCGGGGT 
    GGGAAAATTT GGCAAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8586640 [Map]; Strand: w
      • AT3G23805.1 - [+] show detail - ralf-like 24
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13028 - 5-prime edge 
    TCCTACTTTC TCCCTGGGAA CGGCGTAATC GGAGAGGAAG AAGGAGAGGA 
    GATGATGCCA TCGGAGATAA GTCGGAGAGT AATGATGATG CGGAAACAGT 
    ACATAAGCTA CGAAACTTTA AGGAGAGATA TGGTTCCTTG TCAGAAACCA 
    GGTGCTTCTT ATTACGCTTG TCGCTCTGGT CAGGCTAATG CTTACAACAG 
    AGGATGTAGT GTCATTACTA GGTGTGCTAG AGACACTAAC GACATCAAGA 
    CTTGAAAACA TTGGGGTCTT TAAGTACATT TGAGTTTTAA ACTCAGATGC 
    TCTAGAGGCA AGTGAAATCT TATTATTCTT GTCTTTTGTT TTGTAATGTT 
    GTTGTTTACA TTAGATTTCT TAATTATTGA TATGTAATTT TGGCTATTAA 
    TGTTCAAGTA ATTGATATTT ATAGTCTTGA AAGTGTTGAG TGGAGTAATA 
    GATGGAAAGA TTGTGGAATA AAGTTTGG

AT1G57710.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Undet (anticodon: ???)
Link
InterPro Scan - TAIR

AT1G57720.1

Model type
Protein coding
Short Description
Translation elongation factor EF1B, gamma chain
Computational Description
Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G09640.1); Has 10185 Blast hits to 9750 proteins in 1401 species: Archae - 0; Bacteria - 5136; Metazoa - 1722; Fungi - 558; Plants - 845; Viruses - 5; Other Eukaryotes - 1919 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23805.1

Model type
Protein coding
Short Description
ralf-like 24
Curator Summary
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational Description
ralf-like 24 (RALFL24); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 31 (TAIR:AT4G13950.1); Has 244 Blast hits to 244 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR