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ET13029

CSHL Arabidopsis genetrap mutant lines

Original: ET13029

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13029

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18173850 [Map]; Strand: w
      • AT4G39000.1 - [+] show detail - glycosyl hydrolase 9B17
        Distance: -53; Region: promoter
    Flanking Genome Sequence: ET13029 - 3-prime edge 
    TGAAACGGTA GAGGTTTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAC 
    AAAACTACAT ATCAAAACAA CGAAATCTCA CCAAGTCCTA ATAATTTTTA 
    GGAAAATGAA AGCTTCGATT TACCTTGTAA CCGTTTTCAT ACTTCTACTT 
    CTGCTTCTAC CAACGGCGAT CCCTCACGAC TACTCCGATG CTCTTAGAAA 
    GTCAATCCTC TTTTTCGAAG GTCAACGCTC TGGTCGTCTT CCAAAACAAC 
    AAAGGATGGC GTGGCGTAGA AACTCTGCAC TCAACGACGG AAAAAACCTC 
    AAAACCGACC TCGTTGGTGG TTACTACGAC GCCGGGGACA ACGTTAAGTT 
    TCATTTTCCG ATGGCTTTTA CGGCCACGAT GCTTGCTTGG AGTTCTGTTG 
    ACTTCGGACG CTATATGTCT CAGCATGATT TCAGACATAA TCTCGTAGCC 
    CTCAAGTGGG CCACTGATTA TCTCCTTAAG ACCGTTTCAC AACTCCCTAA 
    TCGCATTTTC GTCCACGTAC GTCTAAACTC TTAACCCGTC GTCGTTTTAT 
    TTAGTGTAAT CGTGCATTTG GTTTTCACCA TCTATGGACA CAATAGTTAT 
    AGTAAAAAAT ATATATTTTG TATATTCACC AATACATAGC GTTATCAAGA 
    ATTTGTTTTC ACCAATTTTG TCATAATAAG ACAGGAATCA AATTGGATAT 
    CTTCCCTGAC AAGATAATCA ATATGTGTTG ATTAGTTTCT TCTTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18173902 [Map]; Strand: w
      • AT4G39000.1 - [+] show detail - glycosyl hydrolase 9B17
        Distance: -105; Region: promoter
    Flanking Genome Sequence: ET13029 - 5-prime edge 
    CCTACTTTCT CCCTGTAGTT TTGAGGGCTT TAGGGTTCAT ATTTATAGGC 
    ACATAATATA TGCTACAACT TCTGGTTCAC GTACGTATTT TGGGTCATTT 
    GGTAAGTAAT CAATACGTTT TAGTTTGGTA AGAATCCATG CATGTTTATC 
    AAAAAAAAAA AAAAATTTTT TTTTAAAACC CGGGACCCTT TTTGGGGTTT 
    CCCCCCCAAG GCCCCAAGGG TTTTTCCCCA AACTTTTTTT TTTTTTTTTC 
    CCCCCCCAAT TTTTTTTAAC GGGTTTTAAA AAAAATTTCC CCAAACAAAA 
    ATTTAAAAAA AATTCTTTGG CTTTTTTCCC CCTAAAGGAA ATTAAAATTT 
    TTTTTTTTTT GGCCAACCCC ATTTTTTTTT AAAAAAAAAA ATCCCCCCCC 
    CCAAAAAAAA CTTTTTTGGG GTTGCCAAAA TTAAAACCCC CGGGGGGGAA 
    AAAAAAAACA AACCCCCTTT TTTGGGACCC TTTATTGGGT GGGAAAACCC 
    CTTTTTTTTT TAATTTTTAA AAAAGGGGGC CTTGGAAAAA AAAAAATAAA 
    ATTTGGGAGC CCCTTTTTCC TTTCGCAAAT AATTTTTTTT AAAAAACCCG 
    GTTAAAAAAA AATTTGGAAA AAAAATTT

AT4G39000.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9B17
Computational Description
glycosyl hydrolase 9B17 (GH9B17); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B18 (TAIR:AT4G39010.1); Has 1741 Blast hits to 1731 proteins in 246 species: Archae - 2; Bacteria - 582; Metazoa - 188; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR