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ET13043

CSHL Arabidopsis genetrap mutant lines

Original: ET13043

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13043

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10740640 [Map]; Strand: c
      • AT4G19740.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -20; Region: promoter
    Flanking Genome Sequence: ET13043 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTGTTCG AGACTCTTTT 
    TTAGCAAAAT TATGCTTTAT GTGTTTCTTT GTTTGCTGTG CTTTACTAGT 
    GATACAAACT GAAAGGGTGC TTCCCTTCTC TTTTTATACA GATTTTGGGA 
    GTAGATATCT TGAATAATAA AACAAAAGAC AAATTCAACT TTGAATTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9434803 [Map]; Strand: w
      • AT4G16770.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: ET13043 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTCCCAG 
    GTAAGTAATA ACTCTCGTTA TTTTTGTTGT CTCATGTTAT AAATTTTTGA 
    CTGTTTTCAT CCATCATGCT GGGGGTGATT TGTGATAACT AGAAAGTTTG 
    GTCTATTTAT TGGAAAAACA AAAAAATGTT GGTTTGTCAA TTTGTTGCGT 
    CAGGTTTCCA CCGGTCCGGG CAAGAGATTA TTTCCACGAG CGATTCAGTC 
    AAACGCTCGC CTCGTACTCC GGTTCCGACT AAAATATATG AGAAGCTCCA 
    CATTTTCTTA AATAAGACAT GTTCAAATGT TTGAGTTTTC ACTTTTGCAT 
    GGACATGATA TAACTAATTA ACTATTATAA ACCAAAAGGA TTAAAAACAC 
    TTAAAACCGT ATCATGTAAG ATGTATGTTT CGATTGATAA ATGTATTCAT 
    TGTAGACTAT GATTTGGTAT ATATTACTTA CAACAATATT TAGTGGAGAA 
    AAGACCCGTT TTTCTAAGGT AGACCTTTTC ATATACGGTA TCATTTATTC 
    TTCGAAAATC TTTGTCTGAA CATTCAATAT TTGTTTTTGC ATTATACACA 
    GTTACAATTA TATTTTTAAG GTTTTTAACT GCGGTTGATA GTACGGATAA 
    CTGTTCGGTT AACANTACAG TTAACTAACG ATTTTGATAC GTTTACGAGT 
    AATATTCTTT TAATGAAACT AATTTGTTTG TTAGTTAATG GTTACAAATT 
    TTTACTGTTT TATATAGTTA CGATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10740567 [Map]; Strand: c
      • AT4G19740.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13043 - 5-prime edge 
    TCCTACTTTC TCCGAAGAAT GACTGATTCT CAGATTCTCG GATCCTCCTC 
    CGGACCCGTA GTAAAAGCTG CCTACTGGTT TCCGGATGGC GAAACCAAAC 
    CAACCGGCAG TGTAATCCCA CAGTCCTCAG CAATCCTTAT TGACTCAACT 
    CTCTTCACTC ACCTTTTCTG CGCCTTCGCA GATCTCGACC TTGAAACCCA 
    CAGAGTCTTC ATCCCCCAAA GGCACGAATA CGAATTCTCC ACCTTCACTG 
    AAATCGTCAG GCAGAAAAAC CATAACGTGA AGACCCTCTT GTCGATCGGC 
    GGGAAAAAAA CAGACAACAA ATTCGCGTTT GCGTCCATGG CAAGTAACCG 
    CACCTCTCGA GAATCGTTCA TCTCCACTCG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10356233 [Map]; Strand: c
      • AT4G18900.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -232; Region: promoter
    Flanking Genome Sequence: ET13043 - 5-prime edge 
    TTTATCCCAA GAATTCCCAA AGATTACAAT AACCAAATAA ACACACACAC 
    ACACACACAA AGAAAAGCAT AACAAACAAA AAGGGTCAAA TAATAATTAT 
    ACCAATTTTC AAAATCCAAG GTCGAGAATC GAGAGGTTCA ACAACAAAGA 
    TAACATAATG ATAGAAGAAT CGGGTAAAAC ACATTCCTTA CTAAAGAAAA 
    TAATTAACCT GATTAACTCT TTACGATGAT GACAACTTAC GTTACAAATA 
    CAAACGAGGC TTACACTTAA CCCTTGCTCG GAGGTATCTA TCCAAATTAG 
    CGAGAGAGAG CGAGGGTTCT GTTTACATAC TCTTAAATAA ACTCACTCAA 
    AAATAAATCA TATAAAAAAA TTATGTATAT ATGGGCCTCA TTTTTAGCCA 
    AATAAGAACA ATTGGACATT TAAATTGGAT CCACTAAGTA ATTTGTTGAC 
    TTGTAAAATA GCCCAGTTGA AGTTACTATT C

AT4G16770.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, flavonoid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G16765.1); Has 6583 Blast hits to 6566 proteins in 839 species: Archae - 0; Bacteria - 934; Metazoa - 52; Fungi - 818; Plants - 3817; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G18900.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G18905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19740.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19720.1); Has 4184 Blast hits to 4027 proteins in 775 species: Archae - 13; Bacteria - 1396; Metazoa - 1408; Fungi - 971; Plants - 145; Viruses - 60; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR