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ET13070

CSHL Arabidopsis genetrap mutant lines

Original: ET13070

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13070

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13070 - 5-prime edge
    GAGAGTGCTT AAGCATAATT TTTG
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18020150 [Map]; Strand: c
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: -524; Region: promoter
    Flanking Genome Sequence: ET13070 - 5-prime edge
    CATCCTACTT TATCCCTGTA TGTGATATAA GTTCAGGGCG TCAGAGATGT 
    TACCTTGGCG AAATCGTATG CATAATATAG TATATCATGT CACATGGGTT
    TTTTTTGCTT TGGTGATTTT CAAAAATCGC TGCATGATAT ATTATGGGTT
    TGGGATCCAC GTAATCATGA ATGATTGACG TATACCTAAA CCTAATAACT
    AAATTTTACT TCAACATATT TGTGATCAAC

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR