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ET13085

CSHL Arabidopsis genetrap mutant lines

Original: ET13085

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13085

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17704796 [Map]; Strand: c
      • AT2G42520.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -36; Region: promoter
    Flanking Genome Sequence: ET13085 - 5-prime edge 
    CTTTCTCCCT GTATCGGAGA CAGAGCAAGA TACAAATGCG CAGAGCGATA 
    GAATCAATAG AGAGAAAAGA GAGGTCGAGA GATATTTTTT AATTATTTTG 
    ACTTTTTTGT TCTTCTCTTA TCAAACCAGA TTGCGTCCCG TTTTCATCAA 
    TCTTTCAACT TGCGTGTCGG TTTGGTTTTC TCGTTCTGGA TTGTATGTCG 
    GCGACTTATG TTGAACTCTC TTTCTTTTAG TTTTTAATGA ATTTAAAATT 
    TAAACTGTTG TAAACACACT TCTCCTCTCA ATTCCATTTG GCCAAAATAT 
    CTGCCTGCGA TGGTGATGAG CATATTTGCC ATAATGATAA CTTG

AT2G42520.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G58510.3); Has 140248 Blast hits to 67514 proteins in 3679 species: Archae - 1004; Bacteria - 58923; Metazoa - 37605; Fungi - 9665; Plants - 13202; Viruses - 1099; Other Eukaryotes - 18750 (source: NCBI BLink).
Link
InterPro Scan - TAIR