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ET13102

CSHL Arabidopsis genetrap mutant lines

Original: ET13102

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13102

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19810588 [Map]; Strand: c
      • AT1G53160.1 - [+] show detail - squamosa promoter binding protein-like 4
        Distance: 3287; Region: intergenic
      • AT1G53163.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1674; Region: intergenic
    Flanking Genome Sequence: ET13102 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GTTTTGTTAT CACTTTAGTG TATTCTTTGA TTGGCGTAAA CTACACAACC 
    AACTTCTTCC AATTACCGAA TCATAATTAC GTCAAAGGTT CATTAAACTA 
    TAAGCAAAAT CGACGAGTCT ACAATAAAAG AGAAAGTAAA AGATTATTAA 
    GCATGGGGTG TTAATGATAA TTGGTGGTCC CTAGCTAATC CCTAGAGAAT 
    GGGCCAGTGA TGTGTCCTAA AGAAAGACCC GAATGGGAGA CAATAAGCCA 
    CATAGTGAGA TCTTTGTCTT TAATTTTGCT TCAGTTTAGT GTACTTTCTT 
    CTTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19810535 [Map]; Strand: c
      • AT1G53160.1 - [+] show detail - squamosa promoter binding protein-like 4
        Distance: 3234; Region: intergenic
      • AT1G53163.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1727; Region: intergenic
    Flanking Genome Sequence: ET13102 - 5-prime edge 
    CCTCTTTCTC CCTGAACAAA CCAATACATG CAAGTAGTTT CTATTATATA 
    TGCGATGTTG GTTTTGTAGT TATAAGCGAC ATTTTTGTTT TGTAGTCGTA 
    TCTATCTGCA GCACAACTAA ATCATATTCG TTTCGCAGTC ATCGACGACA 
    TCGAAAAACT AACTGCGTTT AGTTAAAATT TAAAAGGCTA AAAATGTTAA 
    CGTTTAAAAG TTTTGGACAC TAGTCGCTAA ACCAATAACA ATATAAGTAT 
    ATAACAACCA AAATATTAAA TTTTTGTTGA TTATTAGATT AATCATTTTT 
    GGTGATTAGG TAAATTCACT AAATTGCTAA TTGTTGTCGT TTGTCATTGT 
    TGTTGTCAAC AATAAAACGA ATAAATTTTT ATTTTAGCAT AAGCAAAAAA 
    AGAGAAAGAA AGAATCTTTT CGATATATGA TAATGAGATA AGCCCACCAT 
    ATGTTTGGGC TTAATTGGCC CAATTAGGAC ATATTCTCGT TT

AT1G53160.1

Model type
Protein coding
Short Description
squamosa promoter binding protein-like 4
Curator Summary
Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.
Computational Description
squamosa promoter binding protein-like 4 (SPL4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of vegetative phase change, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 5 (TAIR:AT3G15270.1); Has 846 Blast hits to 845 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 846; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53163.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15250.1); Has 315 Blast hits to 216 proteins in 74 species: Archae - 0; Bacteria - 86; Metazoa - 43; Fungi - 52; Plants - 27; Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink).
Link
InterPro Scan - TAIR