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ET13122

CSHL Arabidopsis genetrap mutant lines

Original: ET13122

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13122

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 858557 [Map]; Strand: w
      • AT5G03440.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -152; Region: promoter
      • AT5G03440.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -129; Region: promoter
      • AT5G03445.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13122 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTCAC 
    ACTAATTATT TACCTCATGA TGCTATTGCT GCATTCTCTG TCGACAATTT 
    ATTATATACG TTAATAACTT GTTGGAGAAT CTAATCAAGT CCTGATTATA 
    AGAAGGATAA AGAAAAGGGA ATTAGAAAAG AAGACATTGA TTCCGATTGG 
    ATTCTGCTTT TTTCTTTTCA CGTTTCCGAT TGTTTCTGGA ACTTTTTGTG 
    AGCCTAAGGT TTATCTCTCT CTTCTAGTCG TCGATTCTGG TCATCGAAGA 
    TTCCAATCAG CTAAGGTTAC ATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3696641 [Map]; Strand: w
      • AT3G11690.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 163; Region: intergenic
      • AT3G11700.1 - [+] show detail - FASCICLIN-like arabinogalactan protein 18 precursor
        Distance: -2198; Region: intergenic
    Flanking Genome Sequence: ET13122 - 5-prime edge 
    CTACTTTCTC CCTGAGTGTG ACATGGTCAT GGATCAGTTA AAAAGATAAA 
    GATAAGATTC AAAGGGTAAA AGGAGAGTCT AGGGTTTAAA AAAACAAGTG 
    GGGAGCTGTC CTTTTCTTTC AAGGGGGTTT GGAACTTGTA GCCTTGTAGG 
    TTGTGATGTA AACTATGAGG ACCACAACAA TCAATCAGTA CTTGGTCATT 
    AGTGTTAAGC ATTAATTCAG GTGTTGCTAA CAACTACTAC CACCTTCTTC 
    TTCTGCATCT CTCTAATGAC TCTTCTTTCC TT

AT3G11690.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11700.1

Model type
Protein coding
Short Description
FASCICLIN-like arabinogalactan protein 18 precursor
Computational Description
FASCICLIN-like arabinogalactan protein 18 precursor (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 488 Blast hits to 470 proteins in 128 species: Archae - 2; Bacteria - 195; Metazoa - 32; Fungi - 4; Plants - 192; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03440.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03440.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03445.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Tyr (anticodon: GTA)
Link
InterPro Scan - TAIR