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ET13228

CSHL Arabidopsis genetrap mutant lines

Original: ET13228

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13228

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10740686 [Map]; Strand: c
      • AT4G19740.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -66; Region: promoter
    Flanking Genome Sequence: ET13228 - 3-prime edge 
    TTTTTTAGAA AATTATGCTT TATGTGTTTC TTTGTTTGTT GTGCTTTAGT 
    AGTGATACAA ACTGAAAGGG TGCTTCCCTT CTCTTTTTAT AGAGATTTTG 
    GGAGTAGATA TCTTGAATAA TAAAACAAAA GACAAATTCA ACTTTGAATT 
    TAGGAGGGTT TTATTGGTTA GTGGATTTTT GTTTATATTT TACAGCCAAA 
    AGTCTTTGCT AAATGTTGTG ACACCATTAA AAGCTCATTT TTGTCATAGT 
    TGATGTATCT TTATTTCACA TATCCTTATA AGTTTAAAAA TTTAATTTAT 
    AGCAGTCAAG TGGTTAAAGA TTTTAACATA TACTATAATA AGTATGAAAA 
    TTTGGGTTCG ACTACTCTCA TTATGATTTT AACCAATTTT GGCAAGAACA 
    TCAGAGCACA TACATTGCAT AATTTCGGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1667250 [Map]; Strand: w
      • AT2G04760.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13228 - 5-prime edge 
    CCTACTTTAT CCCTGATATC GCCTACCAGC AGGATGCTTA AAAGAAATTG 
    AGAAGCTATG TTCTGCTTTC TTGTGGTCTG GACCTGAGCT TAATCACAAG 
    AGAGCAAAAA TAGCATGGAC TTCGCTCCGC AAACCGAAAC AAGAAGGAGG 
    ATTGGGTATC AAATCACTTT CGGAAGCAAA TAAGGTTAGT TGTTTAAAAC 
    TGATCTAGAG ACTCATATCT CGGCAGCCTT CTTTGTGGGT TAATTGGGTT 
    TGGACTTATA TCATTCGGAA AGGTTCCTTC TGGTCCTACA AACGATCGCT 
    CTAGCTTGGG GTCTTGGATG TGGAAGAAGC TACTTAAGTA TAGAGAAGTG 
    GCTAAAACAA TGTGTAAGGT TGAGACAAGA AGTGGTAGTT CAACATCGTT 
    CTGGTATGAC AATTGGTCAC AGCTCGGGCA GCTTGTGGAT ATTACAAATG 
    CTCGCAGAAC AATAAACATG GGGATTCCGT TAGAAGCTAC GGTGGAAACT 
    GTATTGGCTT CTCACAGGAC TAGGCGACAT CGTACAGCCA TTTACAACAA 
    GATAGAGGCA GAGATTCAGT ATACTCGTCA AAACAGGAGG TTAGGTGACG 
    ACATATCACT GTGGCGTTCT TCAGGTGACA ATTTCAGACA TAGCTTCTCA 
    ACAAAAGCAA C

AT2G04760.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.8e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G19740.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19720.1); Has 4184 Blast hits to 4027 proteins in 775 species: Archae - 13; Bacteria - 1396; Metazoa - 1408; Fungi - 971; Plants - 145; Viruses - 60; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR