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ET13316

CSHL Arabidopsis genetrap mutant lines

Original: ET13316

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13316

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13316 - 5-prime edge 
    TAATTTACTC GTGTATATAA TATATTCCAT TCATTCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3165198 [Map]; Strand: c
      • AT5G10100.2 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 3490; Region: intergenic
      • AT5G10110.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1241; Region: intergenic
    Flanking Genome Sequence: ET13316 - 5-prime edge 
    GACATTAATT TACTCGTATA TATAATATAT TCCATTCATT C

AT5G10100.2

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: embryo, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G65140.1).
Link
InterPro Scan - TAIR

AT5G10110.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR