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ET13338

CSHL Arabidopsis genetrap mutant lines

Original: ET13338

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13338

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22395093 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 49; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -3135; Region: intergenic
    Flanking Genome Sequence: ET13338 - 3-prime edge 
    ATGAAACGGT AGAGGTAATT TACCGAACCG TTACCGACCG TTTTCATTCC 
    CTAGTTAGGC CAACACGACG TGAGGCCAAT ACGAAAAAAA GAATCGGCGT 
    TAGAACATGT AAAAGTAGCC TCCTTTGCAT TTAAAATAAA ACATTATCTT 
    TCTTTTTTTT GTCTAGCTCG ACCCCAAAAA TAATAATAGT AAAAGAAGAA 
    AAAAAAAGGT TTCAACTTTT CCAAAATTTG GGCCAACCCA ATTCCCGCAA 
    GGTTGGTAAC CTTTATTCCG CTTTCTTGGA AACCCCCCGA AACTTCGGTT 
    TTTTTGGGTG GGGGAGGGAA AATAAAAATT TTTCACCCCG GGTTCCCCAA 
    ACTCGTTTCA ATGAATCCAA CGTTGTGGAT CCCCAAAAAA TTTCCCTCCC 
    CCGGGAAACT TTTGGGGACC CCCAGGGGTT GGCCCCAAGG CGAAACCTTT 
    AAAACAAATG GGACATTCAG GGATTTTCTA AGAACCACCA ACAACTTTAC 
    CAACCCCGGT TCGCCTCCGT GGCCCGGTTT GGTGGTAACT AACCCGGGCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22766809 [Map]; Strand: w
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -1079; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 2108; Region: intergenic
    Flanking Genome Sequence: ET13338 - 5-prime edge 
    TCCTACTTTC TCCCTTTTAT AGTAATCCAA CAAAATTAAC ATGTGAAAAA 
    GTATTGACAC GTGGAGCAGC CCACTGAATT GGCGATCAAA GATCTTTTTG 
    GGCGGCTTTC TAGATTTACG ACATAGTAAA ACTCTCTCTA CATTAATCTT 
    TGCCTTAGAT TGAATTGGTC GGAGATCGAA AAGACTAAAA CTAGATGGAC 
    ACGCTGTATG TATCTAAGTG GAGTGATTAC TCGTTTTCTT AGAGTGTATT 
    TGTAGGGAAA AAGAATACGT ATACGCACGT ACAGTTGTTA GGGGTCGGAT 
    TGGGCCTACT TGGCCCAATG CCCAAACCCA AGTCAAAAAC CCAAAATAAG 
    TTCCAAACCA AGGAGTATTA AGGCGAAGGG TAGTTTCGTC AAATCCCTCG 
    ATGAATGTCC TACACGCATA GTGCTATAAA TACCGAATAG CATGTCTTGT 
    CACGAGGGGG GATTCCGCCA GGACACTTAG AGACAAAGAA TAGCCCGTCT 
    CAAGTAGCTC GTCAGCTCAC CCTTCTCAAG TAGCTCGTCC GTCTCAAGTC 
    GCTTGTCTCG CCCTTCTCAA GTAGCTCGTC CGTCTAAAGT AGCTTGTCAG 
    CTCGCCCTTC TCAAGAAGCT CGTTAGCTCG CTCCTCATCG CCAAACTCTT 
    CAGCTCGCCT TTAAGCTCTT CAAGCTCCTC GGCTCGTCCT CAAGCTCCTC 
    AGCTCGTCAT CAAGCTCCTC AGCTCGTCTT CAAGC

AT3G60580.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60590.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR