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ET13407

CSHL Arabidopsis genetrap mutant lines

Original: ET13407

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13407

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 41605 [Map]; Strand: w
    Flanking Genome Sequence: ET13407 - 3-prime edge 
    GAAACGGTAG AGGATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACA 
    TTTATCATAA TATTCCTAAA TAGTACGTAA ATAAAAAACA TGCAACCCAT 
    GCATATCCAG TCTTAAGTTT ATACATATAG ATAAATCTCA AACCATACAA 
    ATACCATTGT TCTTGTGATT TTTTACTTCC ATTTCCTTTT TCCTCCAACG 
    GTGTCATATA AAGCTAACAA ATAACTCGTG ATTAAACGGA CATTTCCAAT 
    ATGGGCTTTT GGGCCCATAG TGATATGGGT CTCCTTCCGA TATCTTTGAC 
    TGCGCGTGCC TCCAAAGTTG CTGTAGAGAA CAGAAAGAGG CCTTCGATCC 
    TGGCTTTGTC CAGACAAAAG CTGCCTCATC TACCTGGAAC TTCGGTCGAG 
    GTAGTGGTGA AGGGGGGATA TGTAATCTCA GACAACTCCA CAGGTGACAA 
    AACTAGACGT AATCCTAATG GGGACAGGGT CGGAGCTAGA GATAGCTGCA 
    AAGGCTGGAG AGAAGCTAAG AGAAGAAAGA AAAGCAGTGA GAGTAGTGTC 
    ATTGGTGAGT TGGGAGCTGT TTGATGAACA AAGAGAAGAA TACAAAGAAA 
    GTGTGTTACC TTGAGAGGTT TCAGCAAGAG TGAGCATTGA AGCAGGGTCG 
    ACCTTTGGGT GGGAGAAGAT GGTTGGCTCC AAAAGAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16717643 [Map]; Strand: c
      • AT1G44020.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13407 - 5-prime edge 
    TTTATCCCTG CCTCTGCGGA TTTGGTTTCG GAGTCGGAAT CGGAATGGGG 
    GCCGGATGAC CTTATTTTAT TGTCGCCTAA ATTCAAAGTA GAGCTTGTAC 
    AAGGAAAATT TCATGTGACG GGAAAAGTGG AGCGGAAGAG CAAAGAAAAG 
    GGGATATGTC ACCTTGGAAG CCGGGTGAAA CTCTACTTAA CTAGAGGAGA 
    AGACGCTTCT CATTTTCGCT GCAAAGATTG CAACGGTGAG GACCATGAAG 
    AATGTGAAAA GACTCCCGTT GAGGTAAAAC ACCCTCTTCA TCCAAAACAT 
    TCTCT

AT1G44020.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G44030.1); Has 1404 Blast hits to 613 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 1393; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00114.1

Model type
Pseudogene
Curator Summary
pseudogene of transketolase
Link
InterPro Scan - TAIR