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ET13420

CSHL Arabidopsis genetrap mutant lines

Original: ET13420

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13420

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18077613 [Map]; Strand: c
      • AT4G38700.1 - [+] show detail - Disease resistance-responsive (dirigent-like protein) family protein
        Distance: -436; Region: promoter
    Flanking Genome Sequence: ET13420 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCCAA 
    AATGCCTATT ATTGATCAAT TTTAATATAT TCCCAGCTCT AAAGCGCGTG 
    GTATTATCAT ATTCCCCGTC CCACTACATT CTGTGTGTTT GTACAGGTTG 
    GATTTATTCC TCACCACATA TATCTTAAGT GGACTGCACC GATCAAGAAG 
    ATTATAGAAT ACGGGCCAGA TCTGATACTG GGTCGGGTTA AGTTGGGCCA 
    ATTGGGCTCT TAATAACAAA CATCACTCTC TCTACGCACC ATTGATCACT 
    GCTCAACTAA ACGCTCCCAA ATTCAAAGAC AGATTTAAAC CAATAATGAA 
    ATTGTACAAC TCGTAAAAAA TAAAAGACAC CCCAAAACCC TAAAAATTGC 
    AACAGAGTAT GTGGTAAAAA AAAGAGACAG AGAGATATTA TAAAAAAAAG 
    ACCCTACCAA AATTTTCTAT AGAGTTCCCC CACACAACTT AACTTATCCA 
    AATTAAACAA CACAAATTCT CAGAAGCTAA ACTTCAAGAA CCCAAACTAT 
    CACAATCCAC AAAAATGCCT TTTGACTCTT TAGATTTTGT CCTCCGTCTC 
    TTCCTTCTTG GCCTCTTCTA CAGCCGGTTC GCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18077554 [Map]; Strand: c
      • AT4G38700.1 - [+] show detail - Disease resistance-responsive (dirigent-like protein) family protein
        Distance: -377; Region: promoter
    Flanking Genome Sequence: ET13420 - 5-prime edge 
    ACTTTCTCCC TGATTTTGGC TGGACAATAG CTTACCCATT TTGATAACAC 
    GCGCTCAACG CTCCTAAGGT GCGCGTGGTA CATACATTGG TCCTTACCTC 
    GAATAAAGTT TATGCTAGTT ATTTGGCAGA ATCTCAAAGC TTTTTAGAAT 
    CATAATTTTC TAAAATAATT AAATCTCTTT ACATGTTTTC AAAGTTATCA 
    AACACTATTA CAATTTTGAA CATGTCATCA ATATCAAACA GAAAAAATTT 
    CAAAGTTAAT ACCTGGATGA TATGCATTTA CTATTTTCTT TTTCTTATAT 
    AGAAAAATAT CAAATAGATT TTCTAAATAA TGACATATAC CCTCCTTTTT 
    ATAGGAGAAA AATCTTTTTT C

AT4G38700.1

Model type
Protein coding
Short Description
Disease resistance-responsive (dirigent-like protein) family protein
Computational Description
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT2G21110.1); Has 865 Blast hits to 864 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR