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ET13516

CSHL Arabidopsis genetrap mutant lines

Original: ET13516

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13516

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 201193 [Map]; Strand: c
      • AT3G01510.1 - [+] show detail - like SEX4 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13516 - 5-prime edge 
    CTTTCTCCCT GATGGTAGGA GATACACTCA AGAAGGCTAG TGATTCTTCT 
    GGTGGTACTC TTGTGGAAAT CAAGGATTTT GGTGATACCA AGTAAGAATT 
    GTACAGTACT AGGCTTCTAT ATAACTTGTT AATGTTGTTA ACTAAACATT 
    GCTGGTGACT AGTTAACATG GGAAGATTTA GCATGGAAAC ACTTTGCATA 
    TCAGTGTTTT TGAAATTTTC TTTTTTATTT CTTCCAGTTT TTGATTTATT 
    CAGGAAGATG CTGGTAGAGA AAACTGGATC CTTTAGCCTT GTTCTTGAAA 
    GACCATTCTC TCCCTTTCCC ATTCAGTA

AT3G01510.1

Model type
Protein coding
Short Description
like SEX4 1
Curator Summary
Encodes a putative phosphatase, LSF1, required for normal starch turnover in leaves.
Computational Description
like SEX4 1 (LSF1); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: starch catabolic process; LOCATED IN: starch grain, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), PDZ/DHR/GLGF (InterPro:IPR001478), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G52180.1); Has 834 Blast hits to 834 proteins in 152 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 61; Plants - 322; Viruses - 12; Other Eukaryotes - 115 (source: NCBI BLink).
Link
InterPro Scan - TAIR