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ET13527

CSHL Arabidopsis genetrap mutant lines

Original: ET13527

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13527

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15684002 [Map]; Strand: w
      • AT4G32500.1 - [+] show detail - K+ transporter 5
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: ET13527 - 3-prime edge
    AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAC GTGGAATCCA 
    GATCTGATAC CCGACCGGAT CGTATCGGTT CCTCTAGGTC TACAGCCTCG
    TTTCAGCAAC TGATGCAGCA GTAAATCGTC TCCTCTGGCT GCTGCAAAAC
    ATAAGCTGAG AGGTAAATCC ATTTTCCCCT GAGCCAACAT GAGTTCTGTC
    TCAGCCAAAA TGCCTTTCAT CACTGGATCT GTTGAGTCTT TCAGATGCTG
    CATTAGACCA AAACATATCC CAGATGAGAA AAAATAGTCA AACCAGCTAA
    AATGTTGTAG TCACTATGGA TTTATACGGA AATAGCTTCG GACTAACCTG
    AAGAAGATTA TTCATGATTA TTGCCCCATC ACCAACGTTT GCCTGAACAA
    GATTTAAGAA TGCTGTACGG TTCAGACGAA GCAATTGACT CAATCGTTTG
    GTTCGAACTG TGAACAACTG TGGCCTGTAA CATAGAACCC CAACTTCACC
    AAAAACATGG CCGGTCTGTG CTTCACCAAC TACCTGCAAT GAATACACAA
    CTCACAACTT AAAAACCGTC ACAAAAGAGA AATAAAAATG CGGATTTTAC
    CTGATCCACT CCATTCACAC GCGCAATGAT GTCCTGTCAT ATAGTAGAAA
    TGTCAACTAA TTTGAAAAAA GAACTAGGAG AAATAGAATT GTTTAGCTGA
    TGTAACCAAA GCAACTTACA ACAGCTCCTG TGACCATTAT GTAAAAGTCT
    GACGGTGCTT CATTCCGCAA AATACATCTT CTT

AT4G32500.1

Model type
Protein coding
Short Description
K+ transporter 5
Curator Summary
Encodes AKT5, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR