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ET13557

CSHL Arabidopsis genetrap mutant lines

Original: ET13557

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13557

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8347342 [Map]; Strand: w
      • AT1G23540.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: ET13557 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATGGAGC ATGAAGTCTT 
    CAGAATGATC GAGACAGCCG CTGCATGTGT TAGACATTCT GGTCCAAAAC 
    GCCCACGCAT GGTTCAGGTA ATTCTGACTA ACCAAAAGTC CAAAGCTCCC 
    ATATATAGTA ACAAGTGATT TCTCACATCT GAAAACTTAT CTACTCTTCG 
    AAATAAGGTT GTGAGAGCAT TGGACTGCGA CGGAGACTCG GGAGATATTA 
    GCAACGGAAT CAAAATTGGG CAAAGCACAA CTTATGACTC AGGGCAATAC 
    AATGAAGACA TTATGAAATT CAGGAAAATG GCGTTTGGTG GTGATAACAG 
    CGTACAGTCC GGATTGTACA GCGGAAACTA CTCTGCCAAA AGCTCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4786120 [Map]; Strand: c
      • AT5G14800.1 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: 0; Region: exon7 (3UTR)
      • AT5G14800.2 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: ET13557 - 5-prime edge 
    TACTTTCTCC CTAGTAGTTG CTGCTATTGT TTCACCTCAC TCATACAATC 
    AAAATAAGGG TTATGGGCCT TATGGCATTG CTTGTTTTTA GGCGAGAGTT 
    TTATCCCACT TGTCTTCGAT GGTAGAGGTG AAGATTATTT ATCTAGACTA 
    TGATGTATTA GTTCAGACAG AACTCAGATA CTTTTCTATA ATTCTTAATC 
    TAATAAAAAT CACTTTCAGT TTTGGGTTCA ATATCTGACC AATAAGCCAA 
    GCCTCGGACG TGATTCTGAT TCTAAAAAAA ATCGACTAAA TTAAAGAATC 
    TTTTACTATG AGTCAAAGCT TAATCTAGAG AAACTTCAAC GAGGAAGAAG 
    CATAGACTGG CTATCTATTT AATGATCACT GAATCTTCAA AGAATCCGAC 
    CAATTTTGCA TATAACCAAA AGACTCATGA CTATCTTACC AAATCTTGGT 
    ATAGAATATA TACACATAAG AAAAAGAAAC AAGTACTGGT AGTGAAGACA 
    GATGAGAATC CACAAAAAGA AAATAACCCA GAAAGAAGCC AAGATTTTTC 
    ATACACGAAC GTTCACTCTT TTTATCGGTC CATAATTTGC CAATTTGGTA 
    GATCATGCCG CCATGCCGGA GAATACCATG TAAACCGTAT GACTCGTA

AT1G23540.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.
Computational Description
INFLORESCENCE GROWTH INHIBITOR 1 (IGI1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: developmental process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, anther, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: root hair specific 10 (TAIR:AT1G70460.1); Has 385447 Blast hits to 227080 proteins in 6289 species: Archae - 678; Bacteria - 66210; Metazoa - 145576; Fungi - 56663; Plants - 56890; Viruses - 7200; Other Eukaryotes - 52230 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14800.1

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); FUNCTIONS IN: pyrroline-5-carboxylate reductase activity; INVOLVED IN: response to salt stress, response to heat, proline biosynthetic process; LOCATED IN: cell wall, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7885 Blast hits to 7882 proteins in 2434 species: Archae - 115; Bacteria - 5234; Metazoa - 373; Fungi - 241; Plants - 70; Viruses - 0; Other Eukaryotes - 1852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14800.2

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7429 Blast hits to 7426 proteins in 2378 species: Archae - 102; Bacteria - 5104; Metazoa - 368; Fungi - 229; Plants - 70; Viruses - 0; Other Eukaryotes - 1556 (source: NCBI BLink).
Link
InterPro Scan - TAIR