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ET13578

CSHL Arabidopsis genetrap mutant lines

Original: ET13578

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13578

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78372 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13578 - 3-prime edge 
    ACCACCGCCT CCCTCTCCCT CACCATCCGG ATGCTCTTCA CCGCCGTCAA 
    CCCAAACAAG GTCGGAATCA GGTACGGTGA GTCCAGCTTC ACGGTCATGT 
    ACAAAGGCAT GCCACTGGGG AGGGCGACGG TGCCTGGATT CTACCAGGAT 
    GCGCACAGTA CGAAGAACGT TGAGGCCACC ATCTCCGTCG ACAGAGTCAA 
    TCTTATGCAA GCCCACGCCG CCGATCTCGT CAGAGATGCT TCCTTAAACG 
    ACCGAGTGGA GCTCACAGTC CGCGGAGACG TGGGGGCTAA GATCCGAGTC 
    ATGAATTTCG ATTCACCGGG TGTTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78065 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13578 - 5-prime edge 
    CCTACTTTCT CCCTGGCTCC GGTAATACGG CTGCTGGTTC TGAGCAGCAA 
    TCGGATCGCC GTTGAGACCT GCTCTAGAAC TAGAAGGAGG AGGAGGCATA 
    GTAAGTGAAA GCAGGAAGCT CCCTCTCCCT TTTCACTCTT CTTCTGTAAT 
    AGCGGTGTTG AAATTATACA CAACAAGAGA GAGAGACCCT GTTTCCGTGT 
    CTGGACTCTA GTATTATTGA CAAATTAATG TTTCACAATT TTAACCACCA 
    ATAAAAATAT CAATAATGTA ATTTACAGCA ATTTTAGGCA AATCTCACAC 
    TCAGACAAGG GTTAGAGATG ACTCAAAAAA TGTTGGATCT GATATTAAAA 
    AAACAAACAA ATACAAACAC ACAGTTACTA TCCTTTAGTT ACATCATATA 
    AATGTATTAC GTCGTTGCTT TGTGCTATAT AGCTGACCTC TTGCTGATAT 
    TTATATTTTC GTCAACTCTT GATCAAACAC AGATGCCACG TCGTTTCTAT 
    ACTGACTCTC CTCACTCTCT TTTATCTTCT

AT2G01080.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR