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ET13649

CSHL Arabidopsis genetrap mutant lines

Original: ET13649

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13649

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13649 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATCTC TACCTCTGTT 
    TCTCTTCTGG AGAATCAGAA ACCCAAACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 215415 [Map]; Strand: w
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: -943; Region: promoter
    Flanking Genome Sequence: ET13649 - 5-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATATAA AATGACATAT 
    AGTATTTTAC TAAATTTAGG AATCTTTTCA TTTATATAGC AAAAAAATAA 
    AATAGTGTCG CTGGTGCCAA CCACTCTCTA TTCATCTCAC TCGACAACTG 
    CAACACAACC ACATGCCAAT TGGT

AT2G01470.1

Model type
Protein coding
Short Description
SEC12P-like 2 protein
Curator Summary
Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.
Computational Description
SEC12P-like 2 protein (STL2P); FUNCTIONS IN: nucleotide binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50550.1); Has 6374 Blast hits to 3814 proteins in 364 species: Archae - 22; Bacteria - 2789; Metazoa - 1016; Fungi - 1422; Plants - 400; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR