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ET13718

CSHL Arabidopsis genetrap mutant lines

Original: ET13718

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13718

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18189654 [Map]; Strand: c
      • AT4G39040.2 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
        Distance: 0; Region: intron1 (CDS)
      • AT4G39040.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET13718 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    CAAGTAAGCC GTGAATGTTT TCCACAGTTT CAATCCATTC TCATAGATCA 
    ATCAAACAAC AACATTCCTT TCACAAAACA TAAGACCAAA ACAAAAATCA 
    AGATTCCACA TAATCTAAAA CCCTAGTCGA GTAGAAGAAT CATCCCGCTT 
    TTAACACATG AGTCAAATAA ACCACAAAGT TACACTTACT CAACTCTAAA 
    TCCCTAATTT TGGAGGAGAT TACTTCACTT CCATCTCATC AGATATAAAG 
    ATTGAACACA AAACATTATA AAGTTGATAC CTTTAAGAGC TCGTTCTTCT 
    CGAGAGTCTC GAGGAATGAG AAAACGACAG AATCAGTAAC ACCAGATTTG 
    CCAACGAGTT GACATTTCAA TTTATCACCC AAACTATGCG CGTAAGAAGC 
    CA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18189600 [Map]; Strand: c
      • AT4G39040.2 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G39040.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13718 - 5-prime edge 
    TCCTACTTTC TCCCTGCTTG AGCGAGTCTC TTGTTGATTC TTATATGAGG 
    AACAGGTGAA AATACGCAAG ACATCGCCCG ATGAGCTAGA GGATGCGGTG 
    CAGCATTTGG AGGAAGCGAC TGGTTCCGTA GCAGTAGGGC AAATAGGGCG 
    GACTGTGATA TTGTATAGGC CCAGTCCCAC CAAAATGAAA GCAGAGGCGA 
    AGAAGAAGGA AGTTGAGAGA ATGTCAATTA CTAGAAGGCA GAAATACGCA 
    AACACTAGAC CCACTAAACC CTTTGTAAGT AACCCTGAAA ACATGGCGTA 
    TTTACTCTCT ATTCTTTTGA GTTTGAAGAT CATTCAATCT TTTGGTTATT 
    GCAGAGAAGA GAATATTCAG AGAGACCTGA TGGACGTGGA CGCAGAGGCG 
    GAAGTAGAGT TCCAACGGCG TAAATTTTTA CCCGGTTTGT TT

AT4G39040.1

Model type
Protein coding
Short Description
RNA-binding CRS1 / YhbY (CRM) domain protein
Computational Description
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7881 Blast hits to 5506 proteins in 1409 species: Archae - 38; Bacteria - 2320; Metazoa - 2599; Fungi - 454; Plants - 297; Viruses - 197; Other Eukaryotes - 1976 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39040.2

Model type
Protein coding
Short Description
RNA-binding CRS1 / YhbY (CRM) domain protein
Computational Description
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7808 Blast hits to 5439 proteins in 1394 species: Archae - 38; Bacteria - 2293; Metazoa - 2592; Fungi - 448; Plants - 290; Viruses - 198; Other Eukaryotes - 1949 (source: NCBI BLink).
Link
InterPro Scan - TAIR