Home
Mutant Lines
ET13746

ET13746

CSHL Arabidopsis genetrap mutant lines

Original: ET13746

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13746

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 354301 [Map]; Strand: c
  - AT3G02050.1 - [+] show detail - K+ uptake transporter 3
    Distance: 0; Region: exon9 (3UTR)
  - AT3G02060.1 - [+] show detail - DEAD/DEAH box helicase, putative
    Distance: -59; Region: promoter
  - AT3G02060.2 - [+] show detail - DEAD/DEAH box helicase, putative
    Distance: -111; Region: promoter
Flanking Genome Sequence: ET13746 - 3-prime edge
```
GGTAGAGGTA TTTTACCGAC CGTTACTGAC CGTTTTCATC CCTACTTGGA 
AGTGTAAAAT GTAAACCACT CTTAATAAGC TAAAGACTTC ACTCTCTCTC 
TCTCTCTCTC TTCATTACCC CCGACAATTC TCTTTCTAAA ACCTCTGGGG 
TTCTTGTTAA AGATGACGTC TTTGCTCCCA AATCCCGACC CGATTACTAT 
ACCCCTGGTC CTCAAGCTTA GCTCCTTTCC TCCGCCACGG AGGCTCTTCT 
CTCTCAGGCT CCGGCGCTTC ACCAGAAAGT CATCATCTGT TCTTCCGTTG 
GTCGCTGTTT CATCTCACTC G
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 354221 [Map]; Strand: c
- AT3G02050.1 - [+] show detail - K+ uptake transporter 3
  Distance: 0; Region: exon9 (3UTR)
- AT3G02060.1 - [+] show detail - DEAD/DEAH box helicase, putative
  Distance: -139; Region: promoter
- AT3G02060.2 - [+] show detail - DEAD/DEAH box helicase, putative
  Distance: -191; Region: promoter

CACACATTTC AGGATTAAGA TATAATGTTT CGCAGACTAC ATTCCCAACC 
AGAAGAATAT TTAAGTATAC AATTTTTGCC TTGGGGACAC TTGAAACTTG 
AATAGATTGT TCCCATTATT CCCCCCATGA ATTATGAATG CTACTCATAT 
TAGGGGCTTA AACATAGTAA ATCATGCCAA CTTCAATGAG GCTGATGTGA 
GGAATGTTGA GTGCTACGGC TGGCCCTCTG CAGTTCTTCC TCAAGAAAGA 
ATAACCGATG TCTATCGCCA TCTTCTCCTC ACTCGACGAG GATTTCCTCG 
ATTTCACATA CGAGTGGCCC ATTATATATG CAACACCCGC CTCTTTCGCC 
CGTATCAGAT CCATTAGCTC TTCCCTCACT GAGGACCCCA TCCCACCACT 
TGACGCCGTT AACTGGAACC TCACATGCCT CCTCCTCACT TGCCCTTGCG 
GATACTCATC CTCGTACACT GAACGCAAAC TCTGCAGAGT CATGGATTTA 
CTGCTTTGTA TCGTGGGGTC AGCATAATCA ATCTCCTCTA CCTCTGAAAC 
CGTCAGGATT GAGTTAGAGA GACTCTTCTG GCTGCTTAGA ACGGCCATTC 
TCCCATCATT AGATTGA

AT3G02050.1

Model type: Protein coding
Short Description: K+ uptake transporter 3
Curator Summary: potassium transporter KUP3p (KUP3)
Computational Description: K+ uptake transporter 3 (KUP3); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, response to external stimulus; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: Potassium transporter family protein (TAIR:AT4G23640.1); Has 3477 Blast hits to 3392 proteins in 1029 species: Archae - 13; Bacteria - 2401; Metazoa - 1; Fungi - 102; Plants - 838; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02060.1

Model type: Protein coding
Short Description: DEAD/DEAH box helicase, putative
Computational Description: DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31166 Blast hits to 30948 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1558; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02060.2

Model type: Protein coding
Short Description: DEAD/DEAH box helicase, putative
Computational Description: DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31156 Blast hits to 30938 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1548; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).
Link: InterPro Scan - TAIR